Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36385

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36380 and BPHYT_RS36385 overlap by 4 nucleotidesBPHYT_RS36385 and BPHYT_RS36390 overlap by 4 nucleotidesBPHYT_RS36390 and BPHYT_RS36395 are separated by 84 nucleotides BPHYT_RS36380: BPHYT_RS36380 - phage integrase, at 88,818 to 90,884 _RS36380 BPHYT_RS36385: BPHYT_RS36385 - TetR family transcriptional regulator, at 90,881 to 91,273 _RS36385 BPHYT_RS36390: BPHYT_RS36390 - hypothetical protein, at 91,270 to 91,524 _RS36390 BPHYT_RS36395: BPHYT_RS36395 - hypothetical protein, at 91,609 to 91,920 _RS36395 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 90.002 kb on + strand, within BPHYT_RS36380at 90.358 kb on - strand, within BPHYT_RS36380at 90.358 kb on - strandat 90.848 kb on - strandat 91.173 kb on + strand, within BPHYT_RS36385at 91.507 kb on + strandat 91.514 kb on - strandat 91.650 kb on + strand, within BPHYT_RS36395at 91.651 kb on - strand, within BPHYT_RS36395at 91.985 kb on - strandat 91.985 kb on - strandat 92.180 kb on + strandat 92.185 kb on - strandat 92.185 kb on - strandat 92.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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90,002 + BPHYT_RS36380 0.57 -2.8
90,358 - BPHYT_RS36380 0.75 -0.0
90,358 - +3.4
90,848 - +0.8
91,173 + BPHYT_RS36385 0.74 -3.1
91,507 + +0.6
91,514 - -1.2
91,650 + BPHYT_RS36395 0.13 -1.2
91,651 - BPHYT_RS36395 0.13 +4.1
91,985 - +0.3
91,985 - -1.6
92,180 + -0.3
92,185 - +0.2
92,185 - +0.6
92,190 + -1.1

Or see this region's nucleotide sequence