Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24150 and BPHYT_RS24155 are separated by 208 nucleotides BPHYT_RS24155 and BPHYT_RS24160 are separated by 224 nucleotides
BPHYT_RS24150: BPHYT_RS24150 - glucarate transporter, at 985,625 to 986,977
_RS24150
BPHYT_RS24155: BPHYT_RS24155 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 987,186 to 988,103
_RS24155
BPHYT_RS24160: BPHYT_RS24160 - D-galactarate dehydratase, at 988,328 to 989,917
_RS24160
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1 at 986.425 kb on - strand, within BPHYT_RS24150 at 986.773 kb on - strand, within BPHYT_RS24150 at 986.800 kb on - strand, within BPHYT_RS24150 at 986.877 kb on + strand at 986.997 kb on + strand at 986.997 kb on + strand at 987.056 kb on + strand at 987.419 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.491 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.654 kb on - strand, within BPHYT_RS24155 at 987.760 kb on + strand, within BPHYT_RS24155 at 987.761 kb on - strand, within BPHYT_RS24155 at 987.908 kb on - strand, within BPHYT_RS24155 at 987.974 kb on - strand at 988.003 kb on + strand, within BPHYT_RS24155 at 988.003 kb on + strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.004 kb on - strand, within BPHYT_RS24155 at 988.007 kb on + strand, within BPHYT_RS24155 at 988.106 kb on + strand at 988.106 kb on + strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.107 kb on - strand at 988.111 kb on - strand at 988.219 kb on + strand at 988.219 kb on + strand at 988.416 kb on + strand at 988.509 kb on - strand, within BPHYT_RS24160 at 988.510 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.657 kb on + strand, within BPHYT_RS24160 at 988.658 kb on - strand, within BPHYT_RS24160 at 988.769 kb on - strand, within BPHYT_RS24160
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 986,425 - BPHYT_RS24150 0.59 -0.4 986,773 - BPHYT_RS24150 0.85 +0.6 986,800 - BPHYT_RS24150 0.87 -0.6 986,877 + -0.2 986,997 + +0.0 986,997 + +0.6 987,056 + -1.0 987,419 - BPHYT_RS24155 0.25 +0.5 987,491 - BPHYT_RS24155 0.33 +0.2 987,491 - BPHYT_RS24155 0.33 +1.1 987,491 - BPHYT_RS24155 0.33 -0.4 987,654 - BPHYT_RS24155 0.51 -0.5 987,654 - BPHYT_RS24155 0.51 +0.9 987,760 + BPHYT_RS24155 0.63 +0.4 987,761 - BPHYT_RS24155 0.63 -0.2 987,908 - BPHYT_RS24155 0.79 -0.7 987,974 - +0.1 988,003 + BPHYT_RS24155 0.89 +1.4 988,003 + BPHYT_RS24155 0.89 +0.5 988,004 - BPHYT_RS24155 0.89 +0.3 988,004 - BPHYT_RS24155 0.89 +0.4 988,004 - BPHYT_RS24155 0.89 -0.0 988,007 + BPHYT_RS24155 0.89 -0.5 988,106 + +1.6 988,106 + -0.8 988,107 - -0.6 988,107 - +0.9 988,107 - -0.2 988,107 - -0.2 988,111 - -0.5 988,219 + -0.2 988,219 + -1.1 988,416 + +0.7 988,509 - BPHYT_RS24160 0.11 +0.0 988,510 + BPHYT_RS24160 0.11 -0.5 988,657 + BPHYT_RS24160 0.21 -0.8 988,657 + BPHYT_RS24160 0.21 -0.9 988,658 - BPHYT_RS24160 0.21 -0.7 988,769 - BPHYT_RS24160 0.28 -0.7
Or see this region's nucleotide sequence