Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17095 and BPHYT_RS17100 are separated by 314 nucleotides BPHYT_RS17100 and BPHYT_RS17105 are separated by 77 nucleotides BPHYT_RS17105 and BPHYT_RS17110 are separated by 108 nucleotides
BPHYT_RS17095: BPHYT_RS17095 - proline--tRNA ligase, at 3,874,664 to 3,876,400
_RS17095
BPHYT_RS17100: BPHYT_RS17100 - RNA pyrophosphohydrolase, at 3,876,715 to 3,877,455
_RS17100
BPHYT_RS17105: BPHYT_RS17105 - hypothetical protein, at 3,877,533 to 3,878,090
_RS17105
BPHYT_RS17110: BPHYT_RS17110 - glutamate 5-kinase, at 3,878,199 to 3,879,317
_RS17110
Position (kb)
3876
3877
3878 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3875.859 kb on + strand, within BPHYT_RS17095 at 3875.860 kb on - strand, within BPHYT_RS17095 at 3875.880 kb on + strand, within BPHYT_RS17095 at 3875.881 kb on - strand, within BPHYT_RS17095 at 3876.028 kb on - strand, within BPHYT_RS17095 at 3876.281 kb on - strand at 3876.281 kb on - strand at 3876.282 kb on + strand at 3876.282 kb on + strand at 3876.282 kb on + strand at 3876.283 kb on - strand at 3876.283 kb on - strand at 3876.408 kb on - strand at 3876.506 kb on + strand at 3876.507 kb on - strand at 3876.507 kb on - strand at 3876.507 kb on - strand at 3876.668 kb on + strand at 3876.676 kb on + strand at 3876.679 kb on - strand at 3876.693 kb on + strand at 3876.714 kb on + strand at 3876.875 kb on + strand, within BPHYT_RS17100 at 3876.875 kb on + strand, within BPHYT_RS17100 at 3876.978 kb on - strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.142 kb on + strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.143 kb on - strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.144 kb on + strand, within BPHYT_RS17100 at 3877.145 kb on - strand, within BPHYT_RS17100 at 3877.167 kb on - strand, within BPHYT_RS17100 at 3877.329 kb on - strand, within BPHYT_RS17100 at 3877.453 kb on + strand at 3877.454 kb on - strand at 3877.531 kb on + strand at 3877.610 kb on + strand, within BPHYT_RS17105 at 3877.610 kb on + strand, within BPHYT_RS17105 at 3877.611 kb on - strand, within BPHYT_RS17105 at 3877.613 kb on + strand, within BPHYT_RS17105 at 3877.614 kb on - strand, within BPHYT_RS17105 at 3877.614 kb on - strand, within BPHYT_RS17105 at 3877.616 kb on + strand, within BPHYT_RS17105 at 3877.617 kb on - strand, within BPHYT_RS17105 at 3877.617 kb on - strand, within BPHYT_RS17105 at 3877.617 kb on - strand, within BPHYT_RS17105 at 3877.617 kb on - strand, within BPHYT_RS17105 at 3877.638 kb on + strand, within BPHYT_RS17105 at 3877.639 kb on - strand, within BPHYT_RS17105 at 3877.639 kb on - strand, within BPHYT_RS17105 at 3877.639 kb on - strand, within BPHYT_RS17105 at 3877.639 kb on - strand, within BPHYT_RS17105 at 3877.639 kb on - strand, within BPHYT_RS17105 at 3877.639 kb on - strand at 3877.805 kb on + strand, within BPHYT_RS17105 at 3877.806 kb on - strand, within BPHYT_RS17105 at 3877.838 kb on + strand, within BPHYT_RS17105 at 3877.848 kb on + strand, within BPHYT_RS17105 at 3877.849 kb on - strand, within BPHYT_RS17105 at 3877.872 kb on + strand, within BPHYT_RS17105 at 3877.872 kb on + strand, within BPHYT_RS17105 at 3877.872 kb on + strand, within BPHYT_RS17105 at 3877.888 kb on - strand, within BPHYT_RS17105 at 3877.974 kb on + strand, within BPHYT_RS17105 at 3877.990 kb on - strand, within BPHYT_RS17105 at 3877.990 kb on - strand, within BPHYT_RS17105 at 3877.998 kb on + strand, within BPHYT_RS17105 at 3877.999 kb on - strand, within BPHYT_RS17105 at 3877.999 kb on - strand, within BPHYT_RS17105 at 3877.999 kb on - strand, within BPHYT_RS17105 at 3878.058 kb on + strand at 3878.060 kb on + strand at 3878.166 kb on - strand at 3878.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,875,859 + BPHYT_RS17095 0.69 -0.5 3,875,860 - BPHYT_RS17095 0.69 -1.6 3,875,880 + BPHYT_RS17095 0.70 -1.8 3,875,881 - BPHYT_RS17095 0.70 -1.1 3,876,028 - BPHYT_RS17095 0.79 -0.1 3,876,281 - +0.9 3,876,281 - -2.6 3,876,282 + -2.7 3,876,282 + -0.1 3,876,282 + -1.4 3,876,283 - -0.4 3,876,283 - -1.9 3,876,408 - -0.6 3,876,506 + -2.9 3,876,507 - +1.1 3,876,507 - -1.2 3,876,507 - +0.6 3,876,668 + +0.3 3,876,676 + +0.1 3,876,679 - +0.1 3,876,693 + -0.4 3,876,714 + +0.9 3,876,875 + BPHYT_RS17100 0.22 -0.9 3,876,875 + BPHYT_RS17100 0.22 -0.1 3,876,978 - BPHYT_RS17100 0.35 -1.1 3,877,142 + BPHYT_RS17100 0.58 -2.9 3,877,142 + BPHYT_RS17100 0.58 +3.9 3,877,142 + BPHYT_RS17100 0.58 -0.9 3,877,142 + BPHYT_RS17100 0.58 -1.8 3,877,142 + BPHYT_RS17100 0.58 -1.4 3,877,142 + BPHYT_RS17100 0.58 -0.7 3,877,142 + BPHYT_RS17100 0.58 +0.4 3,877,143 - BPHYT_RS17100 0.58 +1.9 3,877,143 - BPHYT_RS17100 0.58 -1.2 3,877,143 - BPHYT_RS17100 0.58 -2.1 3,877,144 + BPHYT_RS17100 0.58 -2.3 3,877,144 + BPHYT_RS17100 0.58 -1.6 3,877,144 + BPHYT_RS17100 0.58 +0.5 3,877,145 - BPHYT_RS17100 0.58 -1.1 3,877,167 - BPHYT_RS17100 0.61 -2.1 3,877,329 - BPHYT_RS17100 0.83 -1.6 3,877,453 + -0.7 3,877,454 - -0.3 3,877,531 + -0.8 3,877,610 + BPHYT_RS17105 0.14 -0.8 3,877,610 + BPHYT_RS17105 0.14 +0.6 3,877,611 - BPHYT_RS17105 0.14 +0.0 3,877,613 + BPHYT_RS17105 0.14 -0.5 3,877,614 - BPHYT_RS17105 0.15 -1.8 3,877,614 - BPHYT_RS17105 0.15 -0.2 3,877,616 + BPHYT_RS17105 0.15 -0.5 3,877,617 - BPHYT_RS17105 0.15 -0.3 3,877,617 - BPHYT_RS17105 0.15 -0.1 3,877,617 - BPHYT_RS17105 0.15 -0.5 3,877,617 - BPHYT_RS17105 0.15 -1.6 3,877,638 + BPHYT_RS17105 0.19 +0.2 3,877,639 - BPHYT_RS17105 0.19 +0.4 3,877,639 - BPHYT_RS17105 0.19 -0.1 3,877,639 - BPHYT_RS17105 0.19 +0.7 3,877,639 - BPHYT_RS17105 0.19 +1.4 3,877,639 - BPHYT_RS17105 0.19 -0.2 3,877,639 - -0.4 3,877,805 + BPHYT_RS17105 0.49 -1.5 3,877,806 - BPHYT_RS17105 0.49 +0.1 3,877,838 + BPHYT_RS17105 0.55 -1.5 3,877,848 + BPHYT_RS17105 0.56 +0.0 3,877,849 - BPHYT_RS17105 0.57 -0.1 3,877,872 + BPHYT_RS17105 0.61 +0.0 3,877,872 + BPHYT_RS17105 0.61 +0.4 3,877,872 + BPHYT_RS17105 0.61 -0.3 3,877,888 - BPHYT_RS17105 0.64 +0.3 3,877,974 + BPHYT_RS17105 0.79 -0.3 3,877,990 - BPHYT_RS17105 0.82 +0.7 3,877,990 - BPHYT_RS17105 0.82 +1.2 3,877,998 + BPHYT_RS17105 0.83 -0.3 3,877,999 - BPHYT_RS17105 0.84 +0.3 3,877,999 - BPHYT_RS17105 0.84 +0.6 3,877,999 - BPHYT_RS17105 0.84 -1.3 3,878,058 + -1.0 3,878,060 + +0.4 3,878,166 - -0.4 3,878,201 - +0.5
Or see this region's nucleotide sequence