Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04285 and BPHYT_RS04290 are separated by 327 nucleotides BPHYT_RS04290 and BPHYT_RS04295 are separated by 225 nucleotides
BPHYT_RS04285: BPHYT_RS04285 - rhamnosyltransferase, at 980,750 to 981,661
_RS04285
BPHYT_RS04290: BPHYT_RS04290 - glycosyl transferase family 2, at 981,989 to 983,914
_RS04290
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 981.138 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.652 kb on + strand at 981.659 kb on + strand at 982.091 kb on + strand at 982.196 kb on + strand, within BPHYT_RS04290 at 982.587 kb on - strand, within BPHYT_RS04290 at 983.044 kb on + strand, within BPHYT_RS04290 at 983.714 kb on + strand, within BPHYT_RS04290 at 983.762 kb on + strand at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 981,138 - BPHYT_RS04285 0.43 +2.0 981,468 - BPHYT_RS04285 0.79 -2.9 981,468 - BPHYT_RS04285 0.79 +0.4 981,652 + -0.5 981,659 + -0.4 982,091 + -0.6 982,196 + BPHYT_RS04290 0.11 +0.7 982,587 - BPHYT_RS04290 0.31 +1.0 983,044 + BPHYT_RS04290 0.55 -2.3 983,714 + BPHYT_RS04290 0.90 -0.8 983,762 + +0.2 984,273 - BPHYT_RS04295 0.17 +0.1 984,286 + BPHYT_RS04295 0.19 -0.1 984,324 + BPHYT_RS04295 0.23 +0.2 984,371 + BPHYT_RS04295 0.29 -0.2 984,371 + BPHYT_RS04295 0.29 -1.4 984,371 + BPHYT_RS04295 0.29 +1.5 984,372 - BPHYT_RS04295 0.29 -0.0 984,372 - BPHYT_RS04295 0.29 +0.8 984,478 + BPHYT_RS04295 0.43 +0.5 984,478 + BPHYT_RS04295 0.43 +0.6 984,479 - BPHYT_RS04295 0.43 -0.3 984,623 + BPHYT_RS04295 0.61 +0.4 984,647 + BPHYT_RS04295 0.64 -0.3 984,698 + BPHYT_RS04295 0.71 +0.6 984,698 + BPHYT_RS04295 0.71 -0.2 984,699 - BPHYT_RS04295 0.71 +2.8 984,841 + BPHYT_RS04295 0.89 +1.0 984,841 + BPHYT_RS04295 0.89 +0.8
Or see this region's nucleotide sequence