Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02235

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02230 and BPHYT_RS02235 overlap by 8 nucleotidesBPHYT_RS02235 and BPHYT_RS02240 are separated by 94 nucleotides BPHYT_RS02230: BPHYT_RS02230 - acetyl-CoA acetyltransferase, at 512,101 to 513,294 _RS02230 BPHYT_RS02235: BPHYT_RS02235 - beta carbonic anhydrase, at 513,287 to 514,063 _RS02235 BPHYT_RS02240: BPHYT_RS02240 - isocitrate dehydrogenase kinase/phosphatase, at 514,158 to 515,996 _RS02240 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2at 512.342 kb on + strand, within BPHYT_RS02230at 512.825 kb on + strand, within BPHYT_RS02230at 512.846 kb on + strand, within BPHYT_RS02230at 512.912 kb on + strand, within BPHYT_RS02230at 513.424 kb on - strand, within BPHYT_RS02235at 513.496 kb on - strand, within BPHYT_RS02235at 513.554 kb on - strand, within BPHYT_RS02235at 513.564 kb on - strand, within BPHYT_RS02235at 514.113 kb on + strandat 514.114 kb on - strandat 514.114 kb on - strandat 514.306 kb on - strandat 514.541 kb on - strand, within BPHYT_RS02240at 514.541 kb on - strand, within BPHYT_RS02240at 514.582 kb on + strand, within BPHYT_RS02240at 514.720 kb on + strand, within BPHYT_RS02240at 514.721 kb on - strand, within BPHYT_RS02240at 514.721 kb on - strand, within BPHYT_RS02240at 514.721 kb on - strand, within BPHYT_RS02240at 514.891 kb on + strand, within BPHYT_RS02240at 514.891 kb on + strand, within BPHYT_RS02240at 514.892 kb on - strand, within BPHYT_RS02240at 514.964 kb on - strand, within BPHYT_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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512,342 + BPHYT_RS02230 0.20 -0.6
512,825 + BPHYT_RS02230 0.61 -0.4
512,846 + BPHYT_RS02230 0.62 -0.3
512,912 + BPHYT_RS02230 0.68 -0.6
513,424 - BPHYT_RS02235 0.18 -1.6
513,496 - BPHYT_RS02235 0.27 +1.0
513,554 - BPHYT_RS02235 0.34 -2.3
513,564 - BPHYT_RS02235 0.36 +0.0
514,113 + -0.3
514,114 - -0.9
514,114 - -0.7
514,306 - -0.3
514,541 - BPHYT_RS02240 0.21 -1.0
514,541 - BPHYT_RS02240 0.21 -0.2
514,582 + BPHYT_RS02240 0.23 +0.5
514,720 + BPHYT_RS02240 0.31 +0.1
514,721 - BPHYT_RS02240 0.31 +0.1
514,721 - BPHYT_RS02240 0.31 +0.3
514,721 - BPHYT_RS02240 0.31 +2.2
514,891 + BPHYT_RS02240 0.40 -0.8
514,891 + BPHYT_RS02240 0.40 +0.0
514,892 - BPHYT_RS02240 0.40 -0.1
514,964 - BPHYT_RS02240 0.44 +0.2

Or see this region's nucleotide sequence