Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00955

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00950 and BPHYT_RS00955 are separated by 12 nucleotidesBPHYT_RS00955 and BPHYT_RS00960 are separated by 37 nucleotides BPHYT_RS00950: BPHYT_RS00950 - DNA polymerase, at 216,867 to 220,016 _RS00950 BPHYT_RS00955: BPHYT_RS00955 - DNA polymerase, at 220,029 to 221,378 _RS00955 BPHYT_RS00960: BPHYT_RS00960 - recombinase RecA, at 221,416 to 222,114 _RS00960 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 219.048 kb on + strand, within BPHYT_RS00950at 219.049 kb on - strand, within BPHYT_RS00950at 219.118 kb on + strand, within BPHYT_RS00950at 219.118 kb on + strand, within BPHYT_RS00950at 219.118 kb on + strand, within BPHYT_RS00950at 219.118 kb on + strand, within BPHYT_RS00950at 219.118 kb on + strand, within BPHYT_RS00950at 219.119 kb on - strand, within BPHYT_RS00950at 219.137 kb on - strand, within BPHYT_RS00950at 219.149 kb on + strand, within BPHYT_RS00950at 219.150 kb on - strand, within BPHYT_RS00950at 219.209 kb on + strand, within BPHYT_RS00950at 219.238 kb on + strand, within BPHYT_RS00950at 219.339 kb on - strand, within BPHYT_RS00950at 219.339 kb on - strand, within BPHYT_RS00950at 219.378 kb on - strand, within BPHYT_RS00950at 219.796 kb on + strandat 220.132 kb on + strandat 220.132 kb on + strandat 220.133 kb on - strandat 220.133 kb on - strandat 220.135 kb on + strandat 220.135 kb on + strandat 220.608 kb on + strand, within BPHYT_RS00955at 220.719 kb on + strand, within BPHYT_RS00955at 220.719 kb on + strand, within BPHYT_RS00955at 220.819 kb on + strand, within BPHYT_RS00955at 220.819 kb on + strand, within BPHYT_RS00955at 220.819 kb on + strandat 221.261 kb on + strandat 221.261 kb on + strandat 221.261 kb on + strandat 221.261 kb on + strandat 221.291 kb on - strandat 221.291 kb on - strandat 221.316 kb on - strandat 221.698 kb on + strand, within BPHYT_RS00960at 221.699 kb on - strand, within BPHYT_RS00960at 221.699 kb on - strand, within BPHYT_RS00960at 221.869 kb on - strand, within BPHYT_RS00960at 222.110 kb on + strandat 222.110 kb on + strandat 222.111 kb on - strandat 222.111 kb on - strandat 222.114 kb on + strandat 222.114 kb on + strandat 222.114 kb on + strandat 222.114 kb on + strandat 222.114 kb on + strandat 222.114 kb on + strandat 222.115 kb on - strandat 222.115 kb on - strandat 222.115 kb on - strandat 222.167 kb on - strandat 222.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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219,048 + BPHYT_RS00950 0.69 +0.8
219,049 - BPHYT_RS00950 0.69 -0.2
219,118 + BPHYT_RS00950 0.71 -0.1
219,118 + BPHYT_RS00950 0.71 +0.2
219,118 + BPHYT_RS00950 0.71 +1.4
219,118 + BPHYT_RS00950 0.71 -0.4
219,118 + BPHYT_RS00950 0.71 +1.1
219,119 - BPHYT_RS00950 0.71 -1.2
219,137 - BPHYT_RS00950 0.72 -0.1
219,149 + BPHYT_RS00950 0.72 +0.0
219,150 - BPHYT_RS00950 0.72 -0.2
219,209 + BPHYT_RS00950 0.74 -1.0
219,238 + BPHYT_RS00950 0.75 -1.1
219,339 - BPHYT_RS00950 0.78 -0.8
219,339 - BPHYT_RS00950 0.78 +0.7
219,378 - BPHYT_RS00950 0.80 +0.4
219,796 + +0.5
220,132 + -0.5
220,132 + -0.7
220,133 - -1.9
220,133 - +0.7
220,135 + -0.7
220,135 + +1.5
220,608 + BPHYT_RS00955 0.43 -2.4
220,719 + BPHYT_RS00955 0.51 -0.9
220,719 + BPHYT_RS00955 0.51 +0.5
220,819 + BPHYT_RS00955 0.59 -1.4
220,819 + BPHYT_RS00955 0.59 -0.1
220,819 + +0.9
221,261 + +0.3
221,261 + +1.9
221,261 + -0.1
221,261 + +0.6
221,291 - +0.9
221,291 - -1.8
221,316 - +0.1
221,698 + BPHYT_RS00960 0.40 +0.8
221,699 - BPHYT_RS00960 0.40 +5.1
221,699 - BPHYT_RS00960 0.40 +0.3
221,869 - BPHYT_RS00960 0.65 +1.5
222,110 + -0.7
222,110 + -0.6
222,111 - -0.2
222,111 - -0.3
222,114 + +0.0
222,114 + -0.6
222,114 + +0.2
222,114 + +0.3
222,114 + -0.0
222,114 + +1.4
222,115 - -0.7
222,115 - -1.1
222,115 - +0.5
222,167 - -0.7
222,305 - -1.7

Or see this region's nucleotide sequence