Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00440

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00435 and BPHYT_RS00440 are separated by 256 nucleotidesBPHYT_RS00440 and BPHYT_RS00445 are separated by 379 nucleotidesBPHYT_RS00445 and BPHYT_RS00450 overlap by 1 nucleotides BPHYT_RS00435: BPHYT_RS00435 - membrane protein, at 107,899 to 109,056 _RS00435 BPHYT_RS00440: BPHYT_RS00440 - ripening-induced protein-Zn-containing oxidoreductase, at 109,313 to 109,513 _RS00440 BPHYT_RS00445: BPHYT_RS00445 - prevent-host-death protein, at 109,893 to 110,165 _RS00445 BPHYT_RS00450: BPHYT_RS00450 - DNA-binding protein, at 110,165 to 110,578 _RS00450 Position (kb) 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 108.344 kb on + strand, within BPHYT_RS00435at 108.370 kb on + strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.371 kb on - strand, within BPHYT_RS00435at 108.412 kb on + strand, within BPHYT_RS00435at 108.412 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.433 kb on + strand, within BPHYT_RS00435at 108.434 kb on - strand, within BPHYT_RS00435at 108.434 kb on - strand, within BPHYT_RS00435at 108.434 kb on - strand, within BPHYT_RS00435at 108.434 kb on - strand, within BPHYT_RS00435at 108.434 kb on - strand, within BPHYT_RS00435at 108.542 kb on + strand, within BPHYT_RS00435at 108.543 kb on - strand, within BPHYT_RS00435at 108.543 kb on - strand, within BPHYT_RS00435at 108.549 kb on + strand, within BPHYT_RS00435at 108.549 kb on + strand, within BPHYT_RS00435at 108.755 kb on + strand, within BPHYT_RS00435at 108.900 kb on + strand, within BPHYT_RS00435at 108.900 kb on + strand, within BPHYT_RS00435at 108.900 kb on + strand, within BPHYT_RS00435at 108.949 kb on + strandat 108.950 kb on - strandat 109.162 kb on - strandat 109.219 kb on + strandat 109.220 kb on - strandat 109.307 kb on - strandat 109.397 kb on - strand, within BPHYT_RS00440at 109.397 kb on - strand, within BPHYT_RS00440at 109.455 kb on - strand, within BPHYT_RS00440at 109.457 kb on - strand, within BPHYT_RS00440at 109.501 kb on + strandat 109.501 kb on + strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.502 kb on - strandat 109.503 kb on + strandat 109.503 kb on + strandat 109.504 kb on - strandat 109.504 kb on - strandat 109.504 kb on - strandat 109.557 kb on + strandat 109.586 kb on + strandat 109.586 kb on + strandat 109.587 kb on - strandat 109.587 kb on - strandat 109.629 kb on + strandat 109.629 kb on + strandat 109.629 kb on + strandat 109.650 kb on - strandat 109.650 kb on - strandat 109.650 kb on - strandat 109.650 kb on - strandat 109.749 kb on + strandat 109.832 kb on - strandat 110.291 kb on + strand, within BPHYT_RS00450at 110.291 kb on + strand, within BPHYT_RS00450at 110.295 kb on + strand, within BPHYT_RS00450at 110.295 kb on + strand, within BPHYT_RS00450at 110.295 kb on + strand, within BPHYT_RS00450at 110.295 kb on + strand, within BPHYT_RS00450at 110.310 kb on + strand, within BPHYT_RS00450at 110.317 kb on - strand, within BPHYT_RS00450at 110.397 kb on + strand, within BPHYT_RS00450at 110.397 kb on + strand, within BPHYT_RS00450at 110.486 kb on + strand, within BPHYT_RS00450

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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108,344 + BPHYT_RS00435 0.38 +0.6
108,370 + BPHYT_RS00435 0.41 -0.2
108,371 - BPHYT_RS00435 0.41 -0.6
108,371 - BPHYT_RS00435 0.41 +1.7
108,371 - BPHYT_RS00435 0.41 +0.1
108,371 - BPHYT_RS00435 0.41 -0.8
108,371 - BPHYT_RS00435 0.41 +0.0
108,371 - BPHYT_RS00435 0.41 +0.1
108,371 - BPHYT_RS00435 0.41 +0.2
108,412 + BPHYT_RS00435 0.44 -0.4
108,412 + BPHYT_RS00435 0.44 +1.1
108,433 + BPHYT_RS00435 0.46 -0.6
108,433 + BPHYT_RS00435 0.46 -0.5
108,433 + BPHYT_RS00435 0.46 -0.2
108,433 + BPHYT_RS00435 0.46 -0.1
108,433 + BPHYT_RS00435 0.46 -0.3
108,433 + BPHYT_RS00435 0.46 +0.6
108,434 - BPHYT_RS00435 0.46 -2.1
108,434 - BPHYT_RS00435 0.46 +0.7
108,434 - BPHYT_RS00435 0.46 -1.3
108,434 - BPHYT_RS00435 0.46 -0.6
108,434 - BPHYT_RS00435 0.46 +0.0
108,542 + BPHYT_RS00435 0.56 -0.3
108,543 - BPHYT_RS00435 0.56 +0.9
108,543 - BPHYT_RS00435 0.56 -0.0
108,549 + BPHYT_RS00435 0.56 +0.0
108,549 + BPHYT_RS00435 0.56 -0.0
108,755 + BPHYT_RS00435 0.74 +2.9
108,900 + BPHYT_RS00435 0.86 -0.1
108,900 + BPHYT_RS00435 0.86 +0.4
108,900 + BPHYT_RS00435 0.86 +0.3
108,949 + -0.1
108,950 - +0.0
109,162 - +0.1
109,219 + +0.1
109,220 - +0.8
109,307 - +1.2
109,397 - BPHYT_RS00440 0.42 +2.5
109,397 - BPHYT_RS00440 0.42 -0.1
109,455 - BPHYT_RS00440 0.71 -0.2
109,457 - BPHYT_RS00440 0.72 +1.0
109,501 + -0.1
109,501 + -0.6
109,502 - +1.8
109,502 - -0.8
109,502 - +0.0
109,502 - +0.1
109,502 - +0.0
109,502 - -0.1
109,502 - -0.8
109,502 - +1.0
109,502 - -0.7
109,503 + -0.4
109,503 + -1.3
109,504 - +0.3
109,504 - -0.5
109,504 - +0.1
109,557 + -1.6
109,586 + +0.0
109,586 + -0.4
109,587 - -1.9
109,587 - -0.0
109,629 + +1.2
109,629 + -0.2
109,629 + -0.1
109,650 - -0.6
109,650 - -0.5
109,650 - -2.8
109,650 - -0.7
109,749 + +1.3
109,832 - +5.2
110,291 + BPHYT_RS00450 0.30 +0.1
110,291 + BPHYT_RS00450 0.30 -0.5
110,295 + BPHYT_RS00450 0.31 -0.6
110,295 + BPHYT_RS00450 0.31 +0.9
110,295 + BPHYT_RS00450 0.31 +0.9
110,295 + BPHYT_RS00450 0.31 -0.6
110,310 + BPHYT_RS00450 0.35 -2.0
110,317 - BPHYT_RS00450 0.37 +0.4
110,397 + BPHYT_RS00450 0.56 -0.2
110,397 + BPHYT_RS00450 0.56 -1.4
110,486 + BPHYT_RS00450 0.78 -0.3

Or see this region's nucleotide sequence