Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32055

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32050 and BPHYT_RS32055 are separated by 709 nucleotidesBPHYT_RS32055 and BPHYT_RS32060 are separated by 69 nucleotides BPHYT_RS32050: BPHYT_RS32050 - ATP-dependent endonuclease, at 2,763,292 to 2,765,535 _RS32050 BPHYT_RS32055: BPHYT_RS32055 - hypothetical protein, at 2,766,245 to 2,766,586 _RS32055 BPHYT_RS32060: BPHYT_RS32060 - integrase, at 2,766,656 to 2,768,104 _RS32060 Position (kb) 2766 2767Strain fitness (log2 ratio) -1 0 1at 2765.274 kb on + strand, within BPHYT_RS32050at 2765.275 kb on - strand, within BPHYT_RS32050at 2765.279 kb on - strand, within BPHYT_RS32050at 2765.437 kb on - strandat 2765.603 kb on - strandat 2766.419 kb on - strand, within BPHYT_RS32055at 2766.419 kb on - strand, within BPHYT_RS32055

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,765,274 + BPHYT_RS32050 0.88 -0.7
2,765,275 - BPHYT_RS32050 0.88 +0.4
2,765,279 - BPHYT_RS32050 0.89 +0.3
2,765,437 - -0.8
2,765,603 - +0.2
2,766,419 - BPHYT_RS32055 0.51 -1.6
2,766,419 - BPHYT_RS32055 0.51 -0.6

Or see this region's nucleotide sequence