Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00915 and BPHYT_RS00920 are separated by 559 nucleotides BPHYT_RS00920 and BPHYT_RS00925 overlap by 4 nucleotides BPHYT_RS00925 and BPHYT_RS00930 are separated by 84 nucleotides
BPHYT_RS00915: BPHYT_RS00915 - IclR family transcriptional regulator, at 209,766 to 210,644
_RS00915
BPHYT_RS00920: BPHYT_RS00920 - transposase, at 211,204 to 212,040
_RS00920
BPHYT_RS00925: BPHYT_RS00925 - transposase, at 212,037 to 212,660
_RS00925
BPHYT_RS00930: BPHYT_RS00930 - ATP-binding protein, at 212,745 to 213,533
_RS00930
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 210.273 kb on + strand, within BPHYT_RS00915 at 210.473 kb on + strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.478 kb on - strand, within BPHYT_RS00915 at 210.920 kb on + strand at 211.197 kb on - strand at 211.205 kb on + strand at 211.205 kb on + strand at 211.206 kb on - strand at 211.464 kb on - strand, within BPHYT_RS00920 at 211.521 kb on - strand, within BPHYT_RS00920 at 211.550 kb on + strand, within BPHYT_RS00920 at 211.551 kb on - strand, within BPHYT_RS00920 at 212.046 kb on + strand at 212.075 kb on - strand at 212.185 kb on + strand, within BPHYT_RS00925 at 212.185 kb on + strand, within BPHYT_RS00925 at 212.185 kb on + strand, within BPHYT_RS00925 at 212.186 kb on - strand, within BPHYT_RS00925 at 212.186 kb on - strand, within BPHYT_RS00925 at 212.376 kb on - strand, within BPHYT_RS00925 at 212.387 kb on - strand, within BPHYT_RS00925 at 212.396 kb on + strand, within BPHYT_RS00925 at 212.512 kb on + strand, within BPHYT_RS00925 at 212.551 kb on + strand, within BPHYT_RS00925 at 212.552 kb on - strand, within BPHYT_RS00925 at 212.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 210,273 + BPHYT_RS00915 0.58 -0.2 210,473 + BPHYT_RS00915 0.80 -0.4 210,474 - BPHYT_RS00915 0.81 +1.8 210,474 - BPHYT_RS00915 0.81 -0.4 210,474 - BPHYT_RS00915 0.81 -1.6 210,474 - BPHYT_RS00915 0.81 -0.6 210,474 - BPHYT_RS00915 0.81 +0.4 210,477 + BPHYT_RS00915 0.81 -1.0 210,477 + BPHYT_RS00915 0.81 -1.5 210,478 - BPHYT_RS00915 0.81 -1.3 210,920 + +1.8 211,197 - +0.3 211,205 + -0.0 211,205 + +0.1 211,206 - -0.0 211,464 - BPHYT_RS00920 0.31 +0.0 211,521 - BPHYT_RS00920 0.38 +0.8 211,550 + BPHYT_RS00920 0.41 +2.5 211,551 - BPHYT_RS00920 0.41 +2.8 212,046 + -1.0 212,075 - -0.3 212,185 + BPHYT_RS00925 0.24 +0.4 212,185 + BPHYT_RS00925 0.24 +0.0 212,185 + BPHYT_RS00925 0.24 +0.1 212,186 - BPHYT_RS00925 0.24 -0.5 212,186 - BPHYT_RS00925 0.24 -0.5 212,376 - BPHYT_RS00925 0.54 +1.0 212,387 - BPHYT_RS00925 0.56 +0.1 212,396 + BPHYT_RS00925 0.58 -2.6 212,512 + BPHYT_RS00925 0.76 +1.7 212,551 + BPHYT_RS00925 0.82 -1.7 212,552 - BPHYT_RS00925 0.83 -0.2 212,648 - -0.8
Or see this region's nucleotide sequence