Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21190

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21190 and BPHYT_RS21195 are separated by 495 nucleotides BPHYT_RS21190: BPHYT_RS21190 - phospholipase C, at 315,315 to 317,000 _RS21190 BPHYT_RS21195: BPHYT_RS21195 - hypothetical protein, at 317,496 to 318,581 _RS21195 Position (kb) 315 316 317 318Strain fitness (log2 ratio) -1 0 1at 314.599 kb on - strandat 315.523 kb on + strand, within BPHYT_RS21190at 316.057 kb on + strand, within BPHYT_RS21190at 316.058 kb on - strand, within BPHYT_RS21190at 316.094 kb on + strand, within BPHYT_RS21190at 316.103 kb on + strand, within BPHYT_RS21190at 316.214 kb on + strand, within BPHYT_RS21190at 316.272 kb on + strandat 316.422 kb on - strand, within BPHYT_RS21190at 316.496 kb on - strand, within BPHYT_RS21190at 316.498 kb on + strand, within BPHYT_RS21190at 316.594 kb on + strand, within BPHYT_RS21190at 317.987 kb on - strand, within BPHYT_RS21195

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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314,599 - +0.6
315,523 + BPHYT_RS21190 0.12 +0.0
316,057 + BPHYT_RS21190 0.44 -0.2
316,058 - BPHYT_RS21190 0.44 +1.3
316,094 + BPHYT_RS21190 0.46 -0.2
316,103 + BPHYT_RS21190 0.47 +0.1
316,214 + BPHYT_RS21190 0.53 +1.6
316,272 + +1.5
316,422 - BPHYT_RS21190 0.66 -0.5
316,496 - BPHYT_RS21190 0.70 +0.3
316,498 + BPHYT_RS21190 0.70 +0.2
316,594 + BPHYT_RS21190 0.76 +0.4
317,987 - BPHYT_RS21195 0.45 -0.6

Or see this region's nucleotide sequence