Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14380

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14375 and BPHYT_RS14380 are separated by 18 nucleotidesBPHYT_RS14380 and BPHYT_RS14385 are separated by 204 nucleotidesBPHYT_RS14385 and BPHYT_RS14390 overlap by 4 nucleotides BPHYT_RS14375: BPHYT_RS14375 - signal peptidase, at 3,281,064 to 3,281,957 _RS14375 BPHYT_RS14380: BPHYT_RS14380 - elongation factor 4, at 3,281,976 to 3,283,769 _RS14380 BPHYT_RS14385: BPHYT_RS14385 - glutaredoxin, at 3,283,974 to 3,284,237 _RS14385 BPHYT_RS14390: BPHYT_RS14390 - peptidase, at 3,284,234 to 3,285,751 _RS14390 Position (kb) 3281 3282 3283 3284Strain fitness (log2 ratio) -2 -1 0 1at 3282.418 kb on - strand, within BPHYT_RS14380at 3282.443 kb on - strand, within BPHYT_RS14380at 3282.470 kb on - strand, within BPHYT_RS14380at 3282.470 kb on - strand, within BPHYT_RS14380at 3282.545 kb on - strand, within BPHYT_RS14380at 3282.794 kb on - strand, within BPHYT_RS14380at 3283.125 kb on - strand, within BPHYT_RS14380at 3283.163 kb on - strand, within BPHYT_RS14380at 3283.163 kb on - strand, within BPHYT_RS14380at 3283.421 kb on - strand, within BPHYT_RS14380at 3283.421 kb on - strand, within BPHYT_RS14380at 3283.559 kb on - strand, within BPHYT_RS14380at 3283.583 kb on - strand, within BPHYT_RS14380at 3283.761 kb on - strandat 3283.825 kb on - strandat 3283.825 kb on - strandat 3283.842 kb on - strandat 3283.846 kb on - strandat 3283.846 kb on - strandat 3283.951 kb on + strandat 3284.035 kb on + strand, within BPHYT_RS14385at 3284.035 kb on + strand, within BPHYT_RS14385at 3284.086 kb on + strand, within BPHYT_RS14385at 3284.276 kb on - strandat 3284.363 kb on - strandat 3284.386 kb on + strand, within BPHYT_RS14390at 3284.387 kb on - strand, within BPHYT_RS14390at 3284.569 kb on + strand, within BPHYT_RS14390at 3284.717 kb on - strand, within BPHYT_RS14390

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,282,418 - BPHYT_RS14380 0.25 -0.4
3,282,443 - BPHYT_RS14380 0.26 +0.1
3,282,470 - BPHYT_RS14380 0.28 -1.0
3,282,470 - BPHYT_RS14380 0.28 -1.3
3,282,545 - BPHYT_RS14380 0.32 +0.8
3,282,794 - BPHYT_RS14380 0.46 -1.8
3,283,125 - BPHYT_RS14380 0.64 -1.0
3,283,163 - BPHYT_RS14380 0.66 -1.2
3,283,163 - BPHYT_RS14380 0.66 -1.2
3,283,421 - BPHYT_RS14380 0.81 -1.3
3,283,421 - BPHYT_RS14380 0.81 -1.2
3,283,559 - BPHYT_RS14380 0.88 -0.8
3,283,583 - BPHYT_RS14380 0.90 -0.9
3,283,761 - -1.0
3,283,825 - +0.4
3,283,825 - +0.0
3,283,842 - -0.5
3,283,846 - -0.6
3,283,846 - +0.4
3,283,951 + +0.0
3,284,035 + BPHYT_RS14385 0.23 -0.0
3,284,035 + BPHYT_RS14385 0.23 +0.5
3,284,086 + BPHYT_RS14385 0.42 -0.2
3,284,276 - -0.9
3,284,363 - +0.9
3,284,386 + BPHYT_RS14390 0.10 +0.1
3,284,387 - BPHYT_RS14390 0.10 +0.6
3,284,569 + BPHYT_RS14390 0.22 +1.1
3,284,717 - BPHYT_RS14390 0.32 -1.6

Or see this region's nucleotide sequence