Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26860 and BPHYT_RS26865 are separated by 37 nucleotides BPHYT_RS26865 and BPHYT_RS26870 are separated by 278 nucleotides BPHYT_RS26870 and BPHYT_RS26875 are separated by 19 nucleotides
BPHYT_RS26860: BPHYT_RS26860 - major facilitator transporter, at 1,599,116 to 1,600,555
_RS26860
BPHYT_RS26865: BPHYT_RS26865 - GNAT family acetyltransferase, at 1,600,593 to 1,601,027
_RS26865
BPHYT_RS26870: BPHYT_RS26870 - cytochrome C551, at 1,601,306 to 1,601,974
_RS26870
BPHYT_RS26875: BPHYT_RS26875 - procollagen-proline dioxygenase, at 1,601,994 to 1,602,881
_RS26875
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1599.595 kb on + strand, within BPHYT_RS26860 at 1599.602 kb on + strand, within BPHYT_RS26860 at 1599.602 kb on + strand, within BPHYT_RS26860 at 1599.603 kb on - strand, within BPHYT_RS26860 at 1599.838 kb on - strand, within BPHYT_RS26860 at 1599.971 kb on + strand, within BPHYT_RS26860 at 1599.971 kb on + strand, within BPHYT_RS26860 at 1600.478 kb on + strand at 1600.748 kb on + strand, within BPHYT_RS26865 at 1600.749 kb on - strand, within BPHYT_RS26865 at 1600.806 kb on + strand, within BPHYT_RS26865 at 1600.852 kb on - strand, within BPHYT_RS26865 at 1600.942 kb on + strand, within BPHYT_RS26865 at 1600.942 kb on + strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.943 kb on - strand, within BPHYT_RS26865 at 1600.945 kb on - strand, within BPHYT_RS26865 at 1600.945 kb on - strand, within BPHYT_RS26865 at 1601.053 kb on + strand at 1601.053 kb on + strand at 1601.462 kb on + strand, within BPHYT_RS26870 at 1601.630 kb on - strand, within BPHYT_RS26870 at 1601.871 kb on - strand, within BPHYT_RS26870 at 1601.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,599,595 + BPHYT_RS26860 0.33 +1.0 1,599,602 + BPHYT_RS26860 0.34 +0.8 1,599,602 + BPHYT_RS26860 0.34 +0.1 1,599,603 - BPHYT_RS26860 0.34 -0.3 1,599,838 - BPHYT_RS26860 0.50 +1.3 1,599,971 + BPHYT_RS26860 0.59 +0.1 1,599,971 + BPHYT_RS26860 0.59 -3.0 1,600,478 + -0.6 1,600,748 + BPHYT_RS26865 0.36 +0.4 1,600,749 - BPHYT_RS26865 0.36 +0.4 1,600,806 + BPHYT_RS26865 0.49 +0.1 1,600,852 - BPHYT_RS26865 0.60 -1.4 1,600,942 + BPHYT_RS26865 0.80 +0.4 1,600,942 + BPHYT_RS26865 0.80 -0.6 1,600,943 - BPHYT_RS26865 0.80 +0.7 1,600,943 - BPHYT_RS26865 0.80 -1.0 1,600,943 - BPHYT_RS26865 0.80 -0.3 1,600,945 - BPHYT_RS26865 0.81 -0.6 1,600,945 - BPHYT_RS26865 0.81 +0.5 1,601,053 + -0.3 1,601,053 + -0.9 1,601,462 + BPHYT_RS26870 0.23 +1.2 1,601,630 - BPHYT_RS26870 0.48 +0.7 1,601,871 - BPHYT_RS26870 0.84 +0.0 1,601,973 - +0.7
Or see this region's nucleotide sequence