Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25275

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25270 and BPHYT_RS25275 are separated by 706 nucleotidesBPHYT_RS25275 and BPHYT_RS25280 are separated by 415 nucleotides BPHYT_RS25270: BPHYT_RS25270 - multidrug MFS transporter, at 1,244,509 to 1,245,864 _RS25270 BPHYT_RS25275: BPHYT_RS25275 - MarR family transcriptional regulator, at 1,246,571 to 1,247,455 _RS25275 BPHYT_RS25280: BPHYT_RS25280 - diguanylate cyclase, at 1,247,871 to 1,249,322 _RS25280 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1at 1245.966 kb on + strandat 1246.016 kb on + strandat 1246.093 kb on + strandat 1246.148 kb on - strandat 1246.428 kb on + strandat 1246.466 kb on - strandat 1246.486 kb on + strandat 1246.758 kb on - strand, within BPHYT_RS25275at 1246.760 kb on - strand, within BPHYT_RS25275at 1247.207 kb on - strand, within BPHYT_RS25275at 1247.552 kb on - strandat 1247.602 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
1,245,966 + +0.7
1,246,016 + +0.6
1,246,093 + +1.1
1,246,148 - +0.0
1,246,428 + -2.3
1,246,466 - -1.0
1,246,486 + +0.6
1,246,758 - BPHYT_RS25275 0.21 -1.0
1,246,760 - BPHYT_RS25275 0.21 -0.1
1,247,207 - BPHYT_RS25275 0.72 -0.3
1,247,552 - +0.5
1,247,602 + -0.8

Or see this region's nucleotide sequence