Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29855

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29850 and BPHYT_RS29855 are separated by 3 nucleotidesBPHYT_RS29855 and BPHYT_RS29860 overlap by 4 nucleotides BPHYT_RS29850: BPHYT_RS29850 - protein tyrosine kinase, at 2,248,178 to 2,250,388 _RS29850 BPHYT_RS29855: BPHYT_RS29855 - protein-tyrosine-phosphatase, at 2,250,392 to 2,250,829 _RS29855 BPHYT_RS29860: BPHYT_RS29860 - sugar ABC transporter substrate-binding protein, at 2,250,826 to 2,251,980 _RS29860 Position (kb) 2250 2251Strain fitness (log2 ratio) -1 0 1at 2250.580 kb on + strand, within BPHYT_RS29855at 2251.163 kb on + strand, within BPHYT_RS29860at 2251.164 kb on - strand, within BPHYT_RS29860

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,250,580 + BPHYT_RS29855 0.43 +1.2
2,251,163 + BPHYT_RS29860 0.29 -0.1
2,251,164 - BPHYT_RS29860 0.29 -0.8

Or see this region's nucleotide sequence