Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23675 and BPHYT_RS23680 are separated by 71 nucleotides BPHYT_RS23680 and BPHYT_RS23685 are separated by 139 nucleotides BPHYT_RS23685 and BPHYT_RS23690 are separated by 96 nucleotides BPHYT_RS23690 and BPHYT_RS23695 are separated by 302 nucleotides
BPHYT_RS23675: BPHYT_RS23675 - lysine transporter LysE, at 881,109 to 881,762
_RS23675
BPHYT_RS23680: BPHYT_RS23680 - Fe-S protein, at 881,834 to 882,007
_RS23680
BPHYT_RS23685: BPHYT_RS23685 - membrane protein, at 882,147 to 882,467
_RS23685
BPHYT_RS23690: BPHYT_RS23690 - hypothetical protein, at 882,564 to 883,073
_RS23690
BPHYT_RS23695: BPHYT_RS23695 - peptidase S53, at 883,376 to 884,935
_RS23695
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 882.029 kb on - strand at 882.034 kb on - strand at 882.087 kb on + strand at 882.097 kb on - strand at 882.111 kb on + strand at 882.321 kb on + strand, within BPHYT_RS23685 at 882.322 kb on - strand, within BPHYT_RS23685 at 882.343 kb on - strand, within BPHYT_RS23685 at 882.566 kb on - strand at 882.566 kb on - strand at 882.629 kb on - strand, within BPHYT_RS23690 at 882.649 kb on + strand, within BPHYT_RS23690 at 882.680 kb on - strand, within BPHYT_RS23690 at 882.779 kb on - strand, within BPHYT_RS23690 at 882.839 kb on - strand, within BPHYT_RS23690 at 882.839 kb on - strand, within BPHYT_RS23690 at 882.901 kb on + strand, within BPHYT_RS23690 at 882.901 kb on + strand, within BPHYT_RS23690 at 882.901 kb on + strand, within BPHYT_RS23690 at 883.007 kb on + strand, within BPHYT_RS23690 at 883.057 kb on + strand at 883.058 kb on - strand at 883.058 kb on - strand at 883.126 kb on + strand at 883.127 kb on - strand at 883.470 kb on + strand at 883.470 kb on + strand at 883.471 kb on - strand at 883.935 kb on - strand, within BPHYT_RS23695 at 883.997 kb on + strand, within BPHYT_RS23695
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 882,029 - +0.6 882,034 - -0.5 882,087 + +0.6 882,097 - -0.4 882,111 + +2.0 882,321 + BPHYT_RS23685 0.54 +0.3 882,322 - BPHYT_RS23685 0.55 +0.4 882,343 - BPHYT_RS23685 0.61 +0.8 882,566 - +0.3 882,566 - -0.0 882,629 - BPHYT_RS23690 0.13 +2.3 882,649 + BPHYT_RS23690 0.17 +1.9 882,680 - BPHYT_RS23690 0.23 -0.5 882,779 - BPHYT_RS23690 0.42 +3.0 882,839 - BPHYT_RS23690 0.54 +0.3 882,839 - BPHYT_RS23690 0.54 -0.2 882,901 + BPHYT_RS23690 0.66 -1.9 882,901 + BPHYT_RS23690 0.66 +0.1 882,901 + BPHYT_RS23690 0.66 +0.6 883,007 + BPHYT_RS23690 0.87 +0.4 883,057 + +0.1 883,058 - +1.5 883,058 - +0.9 883,126 + -0.3 883,127 - -0.0 883,470 + +0.9 883,470 + -0.1 883,471 - +0.0 883,935 - BPHYT_RS23695 0.36 -1.1 883,997 + BPHYT_RS23695 0.40 +0.9
Or see this region's nucleotide sequence