Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03505 and BPHYT_RS03510 are separated by 149 nucleotides BPHYT_RS03510 and BPHYT_RS03515 are separated by 69 nucleotides
BPHYT_RS03505: BPHYT_RS03505 - FAD-binding protein, at 790,171 to 791,259
_RS03505
BPHYT_RS03510: BPHYT_RS03510 - FAD-binding protein, at 791,409 to 792,902
_RS03510
BPHYT_RS03515: BPHYT_RS03515 - D-lactate dehydrogenase, at 792,972 to 794,387
_RS03515
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1 at 790.975 kb on - strand, within BPHYT_RS03505 at 790.975 kb on - strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.097 kb on - strand, within BPHYT_RS03505 at 791.292 kb on + strand at 791.403 kb on - strand at 791.779 kb on + strand, within BPHYT_RS03510 at 791.780 kb on - strand, within BPHYT_RS03510 at 791.780 kb on - strand, within BPHYT_RS03510 at 791.822 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.854 kb on + strand, within BPHYT_RS03510 at 791.857 kb on + strand, within BPHYT_RS03510 at 791.858 kb on - strand, within BPHYT_RS03510 at 791.871 kb on - strand, within BPHYT_RS03510 at 792.033 kb on + strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.394 kb on + strand, within BPHYT_RS03510 at 792.479 kb on - strand, within BPHYT_RS03510 at 792.482 kb on - strand, within BPHYT_RS03510 at 792.491 kb on - strand, within BPHYT_RS03510 at 792.556 kb on + strand, within BPHYT_RS03510 at 792.870 kb on + strand at 792.870 kb on + strand at 792.871 kb on - strand at 792.966 kb on + strand at 792.966 kb on + strand at 792.966 kb on + strand at 793.037 kb on + strand at 793.626 kb on + strand, within BPHYT_RS03515 at 793.720 kb on + strand, within BPHYT_RS03515 at 793.793 kb on - strand, within BPHYT_RS03515 at 793.897 kb on - strand, within BPHYT_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 790,975 - BPHYT_RS03505 0.74 +1.5 790,975 - BPHYT_RS03505 0.74 -0.5 791,096 + BPHYT_RS03505 0.85 +0.9 791,096 + BPHYT_RS03505 0.85 -0.1 791,097 - BPHYT_RS03505 0.85 -1.9 791,292 + -0.3 791,403 - +0.9 791,779 + BPHYT_RS03510 0.25 -0.6 791,780 - BPHYT_RS03510 0.25 -0.0 791,780 - BPHYT_RS03510 0.25 -0.1 791,822 + BPHYT_RS03510 0.28 -0.1 791,854 + BPHYT_RS03510 0.30 +1.6 791,854 + BPHYT_RS03510 0.30 -0.2 791,854 + BPHYT_RS03510 0.30 -0.3 791,857 + BPHYT_RS03510 0.30 -1.1 791,858 - BPHYT_RS03510 0.30 -1.2 791,871 - BPHYT_RS03510 0.31 -0.8 792,033 + BPHYT_RS03510 0.42 -1.5 792,034 - BPHYT_RS03510 0.42 -1.3 792,034 - BPHYT_RS03510 0.42 +0.1 792,034 - BPHYT_RS03510 0.42 -0.9 792,377 + BPHYT_RS03510 0.65 -0.2 792,377 + BPHYT_RS03510 0.65 +0.6 792,394 + BPHYT_RS03510 0.66 -0.2 792,479 - BPHYT_RS03510 0.72 -0.2 792,482 - BPHYT_RS03510 0.72 +0.2 792,491 - BPHYT_RS03510 0.72 -0.7 792,556 + BPHYT_RS03510 0.77 -0.0 792,870 + -0.0 792,870 + -1.6 792,871 - +0.2 792,966 + -0.2 792,966 + +1.3 792,966 + -0.5 793,037 + +1.5 793,626 + BPHYT_RS03515 0.46 -0.9 793,720 + BPHYT_RS03515 0.53 -0.2 793,793 - BPHYT_RS03515 0.58 -1.5 793,897 - BPHYT_RS03515 0.65 -0.0
Or see this region's nucleotide sequence