Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03305 and BPHYT_RS03310 are separated by 44 nucleotides BPHYT_RS03310 and BPHYT_RS03315 are separated by 259 nucleotides
BPHYT_RS03305: BPHYT_RS03305 - ribosomal RNA small subunit methyltransferase A, at 745,116 to 745,946
_RS03305
BPHYT_RS03310: BPHYT_RS03310 - multidrug DMT transporter permease, at 745,991 to 746,926
_RS03310
BPHYT_RS03315: BPHYT_RS03315 - polymerase, at 747,186 to 748,307
_RS03315
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.944 kb on + strand at 745.945 kb on - strand at 745.993 kb on - strand at 746.159 kb on - strand, within BPHYT_RS03310 at 746.159 kb on - strand, within BPHYT_RS03310 at 746.160 kb on + strand, within BPHYT_RS03310 at 746.190 kb on + strand, within BPHYT_RS03310 at 746.191 kb on - strand, within BPHYT_RS03310 at 746.323 kb on - strand, within BPHYT_RS03310 at 746.598 kb on + strand, within BPHYT_RS03310 at 746.599 kb on - strand, within BPHYT_RS03310 at 746.887 kb on + strand at 746.887 kb on + strand at 747.053 kb on + strand at 747.054 kb on - strand at 747.054 kb on - strand at 747.054 kb on - strand at 747.101 kb on - strand at 747.197 kb on - strand at 747.283 kb on - strand at 747.310 kb on - strand, within BPHYT_RS03315 at 747.422 kb on + strand, within BPHYT_RS03315 at 747.422 kb on + strand, within BPHYT_RS03315 at 747.423 kb on - strand, within BPHYT_RS03315 at 747.423 kb on - strand, within BPHYT_RS03315 at 747.450 kb on + strand, within BPHYT_RS03315 at 747.451 kb on - strand, within BPHYT_RS03315 at 747.552 kb on + strand, within BPHYT_RS03315 at 747.678 kb on + strand, within BPHYT_RS03315 at 747.678 kb on + strand, within BPHYT_RS03315 at 747.690 kb on + strand, within BPHYT_RS03315 at 747.690 kb on + strand, within BPHYT_RS03315 at 747.777 kb on + strand, within BPHYT_RS03315 at 747.880 kb on - strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.915 kb on - strand, within BPHYT_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 745,944 + -0.2 745,945 - +0.3 745,993 - -0.0 746,159 - BPHYT_RS03310 0.18 +0.2 746,159 - BPHYT_RS03310 0.18 -1.5 746,160 + BPHYT_RS03310 0.18 -0.3 746,190 + BPHYT_RS03310 0.21 -0.0 746,191 - BPHYT_RS03310 0.21 +0.3 746,323 - BPHYT_RS03310 0.35 -1.0 746,598 + BPHYT_RS03310 0.65 +0.3 746,599 - BPHYT_RS03310 0.65 -0.1 746,887 + -0.6 746,887 + +1.2 747,053 + -0.2 747,054 - -0.6 747,054 - -0.4 747,054 - +2.7 747,101 - +2.0 747,197 - +0.2 747,283 - +0.2 747,310 - BPHYT_RS03315 0.11 -2.7 747,422 + BPHYT_RS03315 0.21 +0.1 747,422 + BPHYT_RS03315 0.21 -0.7 747,423 - BPHYT_RS03315 0.21 -1.2 747,423 - BPHYT_RS03315 0.21 -0.7 747,450 + BPHYT_RS03315 0.24 +0.2 747,451 - BPHYT_RS03315 0.24 +0.4 747,552 + BPHYT_RS03315 0.33 -1.9 747,678 + BPHYT_RS03315 0.44 +0.5 747,678 + BPHYT_RS03315 0.44 -0.0 747,690 + BPHYT_RS03315 0.45 +0.3 747,690 + BPHYT_RS03315 0.45 +0.7 747,777 + BPHYT_RS03315 0.53 -0.4 747,880 - BPHYT_RS03315 0.62 +0.2 747,912 + BPHYT_RS03315 0.65 -0.7 747,912 + BPHYT_RS03315 0.65 +0.3 747,912 + BPHYT_RS03315 0.65 -0.1 747,912 + BPHYT_RS03315 0.65 -2.9 747,912 + BPHYT_RS03315 0.65 +1.1 747,913 - BPHYT_RS03315 0.65 +0.2 747,913 - BPHYT_RS03315 0.65 -0.0 747,913 - BPHYT_RS03315 0.65 -1.3 747,915 - BPHYT_RS03315 0.65 -0.2
Or see this region's nucleotide sequence