Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotides BPHYT_RS02945 and BPHYT_RS02950 are separated by 43 nucleotides BPHYT_RS02950 and BPHYT_RS02955 are separated by 100 nucleotides
BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536
_RS02940
BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209
_RS02945
BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116
_RS02950
BPHYT_RS02955: BPHYT_RS02955 - formyltetrahydrofolate deformylase, at 656,217 to 657,086
_RS02955
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.262 kb on - strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.509 kb on + strand at 654.510 kb on - strand at 654.551 kb on + strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.681 kb on + strand, within BPHYT_RS02945 at 654.681 kb on + strand, within BPHYT_RS02945 at 654.832 kb on + strand, within BPHYT_RS02945 at 654.833 kb on - strand, within BPHYT_RS02945 at 655.518 kb on - strand, within BPHYT_RS02950 at 655.556 kb on + strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.624 kb on - strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.892 kb on + strand, within BPHYT_RS02950 at 656.316 kb on - strand, within BPHYT_RS02955 at 656.316 kb on - strand, within BPHYT_RS02955 at 656.450 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.605 kb on - strand, within BPHYT_RS02955 at 656.745 kb on + strand, within BPHYT_RS02955 at 656.844 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.896 kb on - strand, within BPHYT_RS02955 at 657.098 kb on - strand at 657.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 654,261 + BPHYT_RS02940 0.51 -0.1 654,261 + BPHYT_RS02940 0.51 -0.0 654,262 - BPHYT_RS02940 0.51 +0.4 654,282 + BPHYT_RS02940 0.55 -0.2 654,282 + BPHYT_RS02940 0.55 -2.0 654,282 + BPHYT_RS02940 0.55 +0.6 654,282 + BPHYT_RS02940 0.55 +0.9 654,282 + BPHYT_RS02940 0.55 +2.9 654,282 + BPHYT_RS02940 0.55 -0.8 654,282 + BPHYT_RS02940 0.55 +0.3 654,509 + -0.1 654,510 - -0.3 654,551 + +0.4 654,601 - +1.0 654,601 - -0.8 654,601 - +0.3 654,681 + BPHYT_RS02945 0.14 +1.0 654,681 + BPHYT_RS02945 0.14 +1.2 654,832 + BPHYT_RS02945 0.39 +1.0 654,833 - BPHYT_RS02945 0.39 +0.3 655,518 - BPHYT_RS02950 0.31 +0.1 655,556 + BPHYT_RS02950 0.35 -0.2 655,557 - BPHYT_RS02950 0.35 +0.1 655,557 - BPHYT_RS02950 0.35 +0.4 655,598 + BPHYT_RS02950 0.40 -0.7 655,598 + BPHYT_RS02950 0.40 -0.9 655,598 + BPHYT_RS02950 0.40 -0.2 655,624 - BPHYT_RS02950 0.43 -0.1 655,628 + BPHYT_RS02950 0.43 -0.2 655,628 + BPHYT_RS02950 0.43 +0.2 655,892 + BPHYT_RS02950 0.74 -0.2 656,316 - BPHYT_RS02955 0.11 +1.5 656,316 - BPHYT_RS02955 0.11 -0.1 656,450 + BPHYT_RS02955 0.27 -0.9 656,604 + BPHYT_RS02955 0.44 +0.3 656,604 + BPHYT_RS02955 0.44 -0.9 656,604 + BPHYT_RS02955 0.44 +1.2 656,605 - BPHYT_RS02955 0.45 -2.4 656,745 + BPHYT_RS02955 0.61 +0.8 656,844 + BPHYT_RS02955 0.72 -1.1 656,895 + BPHYT_RS02955 0.78 -1.6 656,895 + BPHYT_RS02955 0.78 -0.2 656,895 + BPHYT_RS02955 0.78 -0.7 656,895 + BPHYT_RS02955 0.78 +0.0 656,896 - BPHYT_RS02955 0.78 +1.3 657,098 - -0.4 657,098 - +0.8
Or see this region's nucleotide sequence