Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02950

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotidesBPHYT_RS02945 and BPHYT_RS02950 are separated by 43 nucleotidesBPHYT_RS02950 and BPHYT_RS02955 are separated by 100 nucleotides BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536 _RS02940 BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209 _RS02945 BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116 _RS02950 BPHYT_RS02955: BPHYT_RS02955 - formyltetrahydrofolate deformylase, at 656,217 to 657,086 _RS02955 Position (kb) 655 656 657Strain fitness (log2 ratio) -2 -1 0 1 2 3at 654.261 kb on + strand, within BPHYT_RS02940at 654.261 kb on + strand, within BPHYT_RS02940at 654.262 kb on - strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.282 kb on + strand, within BPHYT_RS02940at 654.509 kb on + strandat 654.510 kb on - strandat 654.551 kb on + strandat 654.601 kb on - strandat 654.601 kb on - strandat 654.601 kb on - strandat 654.681 kb on + strand, within BPHYT_RS02945at 654.681 kb on + strand, within BPHYT_RS02945at 654.832 kb on + strand, within BPHYT_RS02945at 654.833 kb on - strand, within BPHYT_RS02945at 655.518 kb on - strand, within BPHYT_RS02950at 655.556 kb on + strand, within BPHYT_RS02950at 655.557 kb on - strand, within BPHYT_RS02950at 655.557 kb on - strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.624 kb on - strand, within BPHYT_RS02950at 655.628 kb on + strand, within BPHYT_RS02950at 655.628 kb on + strand, within BPHYT_RS02950at 655.892 kb on + strand, within BPHYT_RS02950at 656.316 kb on - strand, within BPHYT_RS02955at 656.316 kb on - strand, within BPHYT_RS02955at 656.450 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.605 kb on - strand, within BPHYT_RS02955at 656.745 kb on + strand, within BPHYT_RS02955at 656.844 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.896 kb on - strand, within BPHYT_RS02955at 657.098 kb on - strandat 657.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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654,261 + BPHYT_RS02940 0.51 -0.1
654,261 + BPHYT_RS02940 0.51 -0.0
654,262 - BPHYT_RS02940 0.51 +0.4
654,282 + BPHYT_RS02940 0.55 -0.2
654,282 + BPHYT_RS02940 0.55 -2.0
654,282 + BPHYT_RS02940 0.55 +0.6
654,282 + BPHYT_RS02940 0.55 +0.9
654,282 + BPHYT_RS02940 0.55 +2.9
654,282 + BPHYT_RS02940 0.55 -0.8
654,282 + BPHYT_RS02940 0.55 +0.3
654,509 + -0.1
654,510 - -0.3
654,551 + +0.4
654,601 - +1.0
654,601 - -0.8
654,601 - +0.3
654,681 + BPHYT_RS02945 0.14 +1.0
654,681 + BPHYT_RS02945 0.14 +1.2
654,832 + BPHYT_RS02945 0.39 +1.0
654,833 - BPHYT_RS02945 0.39 +0.3
655,518 - BPHYT_RS02950 0.31 +0.1
655,556 + BPHYT_RS02950 0.35 -0.2
655,557 - BPHYT_RS02950 0.35 +0.1
655,557 - BPHYT_RS02950 0.35 +0.4
655,598 + BPHYT_RS02950 0.40 -0.7
655,598 + BPHYT_RS02950 0.40 -0.9
655,598 + BPHYT_RS02950 0.40 -0.2
655,624 - BPHYT_RS02950 0.43 -0.1
655,628 + BPHYT_RS02950 0.43 -0.2
655,628 + BPHYT_RS02950 0.43 +0.2
655,892 + BPHYT_RS02950 0.74 -0.2
656,316 - BPHYT_RS02955 0.11 +1.5
656,316 - BPHYT_RS02955 0.11 -0.1
656,450 + BPHYT_RS02955 0.27 -0.9
656,604 + BPHYT_RS02955 0.44 +0.3
656,604 + BPHYT_RS02955 0.44 -0.9
656,604 + BPHYT_RS02955 0.44 +1.2
656,605 - BPHYT_RS02955 0.45 -2.4
656,745 + BPHYT_RS02955 0.61 +0.8
656,844 + BPHYT_RS02955 0.72 -1.1
656,895 + BPHYT_RS02955 0.78 -1.6
656,895 + BPHYT_RS02955 0.78 -0.2
656,895 + BPHYT_RS02955 0.78 -0.7
656,895 + BPHYT_RS02955 0.78 +0.0
656,896 - BPHYT_RS02955 0.78 +1.3
657,098 - -0.4
657,098 - +0.8

Or see this region's nucleotide sequence