Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00090 and BPHYT_RS00095 are separated by 687 nucleotides BPHYT_RS00095 and BPHYT_RS00100 are separated by 280 nucleotides
BPHYT_RS00090: BPHYT_RS00090 - reverse transcriptase, at 26,795 to 28,150
_RS00090
BPHYT_RS00095: BPHYT_RS00095 - AraC family transcriptional regulator, at 28,838 to 29,704
_RS00095
BPHYT_RS00100: BPHYT_RS00100 - ethanolamine permease, at 29,985 to 31,388
_RS00100
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.005 kb on - strand, within BPHYT_RS00090 at 28.119 kb on + strand at 28.142 kb on + strand at 28.247 kb on - strand at 28.286 kb on + strand at 28.286 kb on + strand at 28.287 kb on - strand at 28.337 kb on + strand at 28.374 kb on + strand at 28.394 kb on + strand at 28.394 kb on + strand at 28.395 kb on - strand at 28.395 kb on - strand at 28.457 kb on + strand at 28.457 kb on + strand at 28.457 kb on + strand at 28.458 kb on - strand at 28.458 kb on - strand at 28.458 kb on - strand at 28.458 kb on - strand at 28.540 kb on + strand at 28.541 kb on - strand at 28.577 kb on - strand at 28.678 kb on + strand at 28.681 kb on - strand at 28.726 kb on - strand at 28.726 kb on - strand at 28.726 kb on - strand at 28.728 kb on + strand at 28.729 kb on - strand at 28.731 kb on + strand at 28.731 kb on + strand at 28.731 kb on + strand at 28.731 kb on + strand at 28.732 kb on - strand at 28.732 kb on - strand at 28.736 kb on - strand at 28.737 kb on + strand at 28.737 kb on + strand at 28.738 kb on - strand at 28.742 kb on - strand at 28.742 kb on - strand at 28.743 kb on + strand at 28.743 kb on + strand at 28.744 kb on - strand at 28.834 kb on - strand at 28.834 kb on - strand at 28.905 kb on + strand at 28.997 kb on - strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.999 kb on - strand, within BPHYT_RS00095 at 29.245 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.280 kb on - strand, within BPHYT_RS00095 at 29.376 kb on + strand, within BPHYT_RS00095 at 29.527 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.560 kb on - strand, within BPHYT_RS00095 at 29.578 kb on - strand, within BPHYT_RS00095 at 29.640 kb on + strand at 29.640 kb on + strand at 29.641 kb on - strand at 29.690 kb on - strand at 29.744 kb on + strand at 29.784 kb on + strand at 29.835 kb on + strand at 30.118 kb on - strand at 30.180 kb on + strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.182 kb on + strand, within BPHYT_RS00100 at 30.221 kb on + strand, within BPHYT_RS00100 at 30.409 kb on - strand, within BPHYT_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 28,005 - BPHYT_RS00090 0.89 -0.3 28,119 + +0.3 28,142 + -0.3 28,247 - -0.6 28,286 + -0.1 28,286 + +0.4 28,287 - -1.5 28,337 + -3.2 28,374 + -0.2 28,394 + -2.2 28,394 + +0.4 28,395 - -0.5 28,395 - -0.4 28,457 + -0.1 28,457 + -0.2 28,457 + -0.4 28,458 - -0.3 28,458 - +1.3 28,458 - +0.0 28,458 - -0.9 28,540 + +1.1 28,541 - -1.0 28,577 - +0.6 28,678 + -0.4 28,681 - -0.1 28,726 - -0.1 28,726 - -0.5 28,726 - -0.2 28,728 + +1.0 28,729 - -1.4 28,731 + -0.0 28,731 + -2.2 28,731 + -1.3 28,731 + -0.3 28,732 - -0.4 28,732 - -0.9 28,736 - -1.2 28,737 + +0.1 28,737 + -0.1 28,738 - -0.2 28,742 - -0.1 28,742 - -0.5 28,743 + -0.8 28,743 + +0.4 28,744 - +1.0 28,834 - -1.9 28,834 - -0.1 28,905 + +1.1 28,997 - BPHYT_RS00095 0.18 +2.6 28,998 + BPHYT_RS00095 0.18 -0.0 28,998 + BPHYT_RS00095 0.18 +0.4 28,999 - BPHYT_RS00095 0.19 +0.6 29,245 + BPHYT_RS00095 0.47 -0.4 29,247 + BPHYT_RS00095 0.47 +0.4 29,247 + BPHYT_RS00095 0.47 +0.9 29,247 + BPHYT_RS00095 0.47 -2.6 29,248 - BPHYT_RS00095 0.47 +0.1 29,248 - BPHYT_RS00095 0.47 -0.0 29,248 - BPHYT_RS00095 0.47 +0.3 29,248 - BPHYT_RS00095 0.47 +0.5 29,280 - BPHYT_RS00095 0.51 -0.0 29,376 + BPHYT_RS00095 0.62 +0.3 29,527 + BPHYT_RS00095 0.79 +1.2 29,559 + BPHYT_RS00095 0.83 -0.6 29,559 + BPHYT_RS00095 0.83 -1.0 29,560 - BPHYT_RS00095 0.83 -0.0 29,578 - BPHYT_RS00095 0.85 -0.5 29,640 + -0.3 29,640 + -0.5 29,641 - -0.4 29,690 - -0.5 29,744 + -1.2 29,784 + +0.1 29,835 + +0.5 30,118 - -0.7 30,180 + BPHYT_RS00100 0.14 +0.4 30,181 - BPHYT_RS00100 0.14 +0.4 30,181 - BPHYT_RS00100 0.14 -0.3 30,182 + BPHYT_RS00100 0.14 -0.8 30,221 + BPHYT_RS00100 0.17 +0.3 30,409 - BPHYT_RS00100 0.30 -0.0
Or see this region's nucleotide sequence