Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22040 and BPHYT_RS22045 are separated by 3 nucleotides BPHYT_RS22045 and BPHYT_RS22050 are separated by 17 nucleotides BPHYT_RS22050 and BPHYT_RS22055 are separated by 181 nucleotides
BPHYT_RS22040: BPHYT_RS22040 - peptide ABC transporter permease, at 499,983 to 500,897
_RS22040
BPHYT_RS22045: BPHYT_RS22045 - peptide ABC transporter permease, at 500,901 to 501,839
_RS22045
BPHYT_RS22050: BPHYT_RS22050 - peptide ABC transporter substrate-binding protein, at 501,857 to 503,473
_RS22050
BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227
_RS22055
Position (kb) 501
502
503
504 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.933 kb on - strand at 501.652 kb on + strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.683 kb on - strand, within BPHYT_RS22045 at 501.828 kb on - strand at 501.873 kb on + strand at 501.873 kb on + strand at 501.874 kb on - strand at 501.874 kb on - strand at 501.903 kb on + strand at 501.932 kb on - strand at 501.982 kb on - strand at 502.090 kb on - strand, within BPHYT_RS22050 at 502.153 kb on - strand, within BPHYT_RS22050 at 502.221 kb on + strand, within BPHYT_RS22050 at 502.576 kb on + strand, within BPHYT_RS22050 at 502.587 kb on + strand, within BPHYT_RS22050 at 502.587 kb on + strand, within BPHYT_RS22050 at 502.588 kb on - strand, within BPHYT_RS22050 at 502.590 kb on + strand, within BPHYT_RS22050 at 502.594 kb on - strand, within BPHYT_RS22050 at 502.836 kb on + strand, within BPHYT_RS22050 at 503.118 kb on + strand, within BPHYT_RS22050 at 503.640 kb on + strand at 504.063 kb on - strand, within BPHYT_RS22055 at 504.193 kb on - strand at 504.263 kb on + strand at 504.264 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.266 kb on - strand at 504.270 kb on - strand at 504.270 kb on - strand at 504.274 kb on - strand at 504.358 kb on - strand at 504.358 kb on - strand at 504.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 500,933 - -0.9 501,652 + BPHYT_RS22045 0.80 +0.4 501,683 - BPHYT_RS22045 0.83 +0.4 501,683 - BPHYT_RS22045 0.83 +1.4 501,828 - +0.1 501,873 + -0.0 501,873 + +1.0 501,874 - -1.2 501,874 - -0.9 501,903 + -1.1 501,932 - -0.2 501,982 - -0.0 502,090 - BPHYT_RS22050 0.14 +0.1 502,153 - BPHYT_RS22050 0.18 -0.1 502,221 + BPHYT_RS22050 0.23 -0.7 502,576 + BPHYT_RS22050 0.44 -1.0 502,587 + BPHYT_RS22050 0.45 +0.2 502,587 + BPHYT_RS22050 0.45 -0.5 502,588 - BPHYT_RS22050 0.45 -0.3 502,590 + BPHYT_RS22050 0.45 -0.1 502,594 - BPHYT_RS22050 0.46 -0.9 502,836 + BPHYT_RS22050 0.61 +0.6 503,118 + BPHYT_RS22050 0.78 -0.8 503,640 + -0.9 504,063 - BPHYT_RS22055 0.71 -0.2 504,193 - -0.6 504,263 + +1.4 504,264 - +0.3 504,266 - +0.1 504,266 - -0.7 504,266 - -0.3 504,270 - +0.0 504,270 - -1.1 504,274 - -0.3 504,358 - +2.7 504,358 - -2.6 504,441 - -0.9
Or see this region's nucleotide sequence