Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20090

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20080 and BPHYT_RS20085 are separated by 16 nucleotidesBPHYT_RS20085 and BPHYT_RS20090 are separated by 40 nucleotidesBPHYT_RS20090 and BPHYT_RS20095 are separated by 249 nucleotidesBPHYT_RS20095 and BPHYT_RS20100 overlap by 11 nucleotides BPHYT_RS20080: BPHYT_RS20080 - ABC transporter permease, at 48,178 to 49,041 _RS20080 BPHYT_RS20085: BPHYT_RS20085 - mannosyltransferase, at 49,058 to 49,852 _RS20085 BPHYT_RS20090: BPHYT_RS20090 - nitrate ABC transporter substrate-binding protein, at 49,893 to 50,912 _RS20090 BPHYT_RS20095: BPHYT_RS20095 - transcriptional regulator, at 51,162 to 51,839 _RS20095 BPHYT_RS20100: BPHYT_RS20100 - sensor histidine kinase, at 51,829 to 53,223 _RS20100 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.041 kb on + strandat 49.042 kb on - strandat 49.519 kb on - strand, within BPHYT_RS20085at 49.666 kb on + strand, within BPHYT_RS20085at 49.894 kb on + strandat 50.102 kb on - strand, within BPHYT_RS20090at 50.985 kb on + strandat 51.545 kb on - strand, within BPHYT_RS20095at 51.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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49,041 + +0.3
49,042 - -1.6
49,519 - BPHYT_RS20085 0.58 +0.4
49,666 + BPHYT_RS20085 0.76 +1.6
49,894 + +1.6
50,102 - BPHYT_RS20090 0.20 +0.2
50,985 + -0.1
51,545 - BPHYT_RS20095 0.56 +1.8
51,891 - -2.5

Or see this region's nucleotide sequence