Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32360

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32350 and BPHYT_RS32355 are separated by 14 nucleotidesBPHYT_RS32355 and BPHYT_RS32360 overlap by 14 nucleotidesBPHYT_RS32360 and BPHYT_RS32365 are separated by 72 nucleotides BPHYT_RS32350: BPHYT_RS32350 - ABC transporter permease, at 2,829,346 to 2,830,158 _RS32350 BPHYT_RS32355: BPHYT_RS32355 - ABC transporter permease, at 2,830,173 to 2,831,045 _RS32355 BPHYT_RS32360: BPHYT_RS32360 - spermidine/putrescine ABC transporter ATPase, at 2,831,032 to 2,832,120 _RS32360 BPHYT_RS32365: BPHYT_RS32365 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,832,193 to 2,833,260 _RS32365 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2830.113 kb on + strandat 2830.992 kb on + strandat 2831.339 kb on - strand, within BPHYT_RS32360at 2832.096 kb on + strandat 2832.141 kb on - strandat 2832.402 kb on - strand, within BPHYT_RS32365at 2832.503 kb on - strand, within BPHYT_RS32365at 2832.880 kb on + strand, within BPHYT_RS32365at 2832.880 kb on + strand, within BPHYT_RS32365at 2832.897 kb on - strand, within BPHYT_RS32365

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,830,113 + +0.1
2,830,992 + +1.2
2,831,339 - BPHYT_RS32360 0.28 +0.3
2,832,096 + +0.5
2,832,141 - -0.5
2,832,402 - BPHYT_RS32365 0.20 +0.6
2,832,503 - BPHYT_RS32365 0.29 -1.0
2,832,880 + BPHYT_RS32365 0.64 -0.2
2,832,880 + BPHYT_RS32365 0.64 -1.8
2,832,897 - BPHYT_RS32365 0.66 -0.3

Or see this region's nucleotide sequence