Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22065 and BPHYT_RS22070 are separated by 514 nucleotides BPHYT_RS22070 and BPHYT_RS22075 are separated by 404 nucleotides
BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383
_RS22065
BPHYT_RS22070: BPHYT_RS22070 - DNA-binding protein, at 508,898 to 509,350
_RS22070
BPHYT_RS22075: BPHYT_RS22075 - hypothetical protein, at 509,755 to 511,164
_RS22075
Position (kb) 508
509
510 Strain fitness (log2 ratio) -1
0
1 at 507.935 kb on - strand, within BPHYT_RS22065 at 507.959 kb on - strand, within BPHYT_RS22065 at 508.085 kb on - strand, within BPHYT_RS22065 at 508.268 kb on - strand at 508.315 kb on - strand at 508.381 kb on + strand at 508.466 kb on - strand at 508.573 kb on - strand at 508.676 kb on - strand at 508.685 kb on + strand at 508.788 kb on - strand at 508.788 kb on - strand at 509.377 kb on + strand at 509.434 kb on + strand at 509.435 kb on - strand at 509.435 kb on - strand at 509.435 kb on - strand at 509.484 kb on + strand at 509.534 kb on + strand at 509.557 kb on + strand at 509.557 kb on + strand at 509.557 kb on + strand at 509.557 kb on + strand at 509.558 kb on - strand at 509.567 kb on - strand at 509.654 kb on + strand at 509.675 kb on + strand at 509.728 kb on + strand at 509.764 kb on + strand at 509.764 kb on + strand at 509.765 kb on - strand at 510.052 kb on + strand, within BPHYT_RS22075 at 510.052 kb on + strand, within BPHYT_RS22075 at 510.052 kb on + strand, within BPHYT_RS22075 at 510.053 kb on - strand, within BPHYT_RS22075 at 510.104 kb on - strand, within BPHYT_RS22075 at 510.168 kb on + strand, within BPHYT_RS22075 at 510.215 kb on - strand, within BPHYT_RS22075 at 510.256 kb on + strand, within BPHYT_RS22075 at 510.257 kb on - strand, within BPHYT_RS22075 at 510.257 kb on - strand, within BPHYT_RS22075 at 510.258 kb on + strand, within BPHYT_RS22075 at 510.258 kb on + strand, within BPHYT_RS22075
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 507,935 - BPHYT_RS22065 0.70 +0.2 507,959 - BPHYT_RS22065 0.71 +1.0 508,085 - BPHYT_RS22065 0.80 +1.2 508,268 - +0.0 508,315 - -0.7 508,381 + +0.7 508,466 - -0.3 508,573 - -1.7 508,676 - +0.6 508,685 + +0.7 508,788 - -1.1 508,788 - -0.0 509,377 + +1.2 509,434 + +0.1 509,435 - +0.4 509,435 - -0.8 509,435 - +0.7 509,484 + +0.2 509,534 + +0.5 509,557 + -0.5 509,557 + +0.5 509,557 + +0.9 509,557 + +0.6 509,558 - -0.5 509,567 - +0.6 509,654 + +1.1 509,675 + +0.4 509,728 + -0.3 509,764 + -1.1 509,764 + -0.1 509,765 - +0.0 510,052 + BPHYT_RS22075 0.21 -0.9 510,052 + BPHYT_RS22075 0.21 -1.2 510,052 + BPHYT_RS22075 0.21 -0.9 510,053 - BPHYT_RS22075 0.21 -0.3 510,104 - BPHYT_RS22075 0.25 +0.2 510,168 + BPHYT_RS22075 0.29 +0.0 510,215 - BPHYT_RS22075 0.33 +0.4 510,256 + BPHYT_RS22075 0.36 -0.9 510,257 - BPHYT_RS22075 0.36 +0.6 510,257 - BPHYT_RS22075 0.36 +0.1 510,258 + BPHYT_RS22075 0.36 +0.8 510,258 + BPHYT_RS22075 0.36 +0.4
Or see this region's nucleotide sequence