Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20210

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20205 and BPHYT_RS20210 overlap by 1 nucleotidesBPHYT_RS20210 and BPHYT_RS20215 are separated by 474 nucleotides BPHYT_RS20205: BPHYT_RS20205 - alcohol dehydrogenase, at 78,863 to 80,023 _RS20205 BPHYT_RS20210: BPHYT_RS20210 - antibiotic biosynthesis monooxygenase, at 80,023 to 80,331 _RS20210 BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477 _RS20215 Position (kb) 80 81Strain fitness (log2 ratio) -1 0 1 2at 79.098 kb on - strand, within BPHYT_RS20205at 79.098 kb on - strand, within BPHYT_RS20205at 79.411 kb on - strand, within BPHYT_RS20205at 79.411 kb on - strand, within BPHYT_RS20205at 79.411 kb on - strand, within BPHYT_RS20205at 79.411 kb on - strand, within BPHYT_RS20205at 79.653 kb on + strand, within BPHYT_RS20205at 79.654 kb on - strand, within BPHYT_RS20205at 79.654 kb on - strand, within BPHYT_RS20205at 80.046 kb on + strandat 80.167 kb on + strand, within BPHYT_RS20210at 80.318 kb on + strandat 80.319 kb on - strandat 80.319 kb on - strandat 80.355 kb on + strandat 80.426 kb on + strandat 80.506 kb on + strandat 80.507 kb on - strandat 80.685 kb on - strandat 80.722 kb on + strandat 80.723 kb on - strandat 80.806 kb on - strandat 80.806 kb on - strandat 81.094 kb on + strand, within BPHYT_RS20215at 81.094 kb on + strand, within BPHYT_RS20215at 81.095 kb on - strand, within BPHYT_RS20215

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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79,098 - BPHYT_RS20205 0.20 +0.6
79,098 - BPHYT_RS20205 0.20 +0.6
79,411 - BPHYT_RS20205 0.47 -0.2
79,411 - BPHYT_RS20205 0.47 +0.6
79,411 - BPHYT_RS20205 0.47 -0.0
79,411 - BPHYT_RS20205 0.47 -0.3
79,653 + BPHYT_RS20205 0.68 -0.4
79,654 - BPHYT_RS20205 0.68 -0.8
79,654 - BPHYT_RS20205 0.68 +1.2
80,046 + +1.9
80,167 + BPHYT_RS20210 0.47 +0.8
80,318 + -0.1
80,319 - -0.5
80,319 - -1.5
80,355 + -0.4
80,426 + +0.2
80,506 + +1.2
80,507 - -0.3
80,685 - -0.7
80,722 + -1.7
80,723 - +0.5
80,806 - -0.4
80,806 - -0.4
81,094 + BPHYT_RS20215 0.43 +0.8
81,094 + BPHYT_RS20215 0.43 -0.3
81,095 - BPHYT_RS20215 0.43 -1.0

Or see this region's nucleotide sequence