Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02390 and BPHYT_RS02395 are separated by 57 nucleotides BPHYT_RS02395 and BPHYT_RS02400 are separated by 31 nucleotides BPHYT_RS02400 and BPHYT_RS02405 are separated by 136 nucleotides BPHYT_RS02405 and BPHYT_RS02410 are separated by 8 nucleotides
BPHYT_RS02390: BPHYT_RS02390 - ABC transporter substrate-binding protein, at 545,869 to 546,831
_RS02390
BPHYT_RS02395: BPHYT_RS02395 - ABC transporter, at 546,889 to 547,515
_RS02395
BPHYT_RS02400: BPHYT_RS02400 - teicoplanin resistance protein VanZ, at 547,547 to 548,704
_RS02400
BPHYT_RS02405: BPHYT_RS02405 - ferredoxin, at 548,841 to 549,164
_RS02405
BPHYT_RS02410: BPHYT_RS02410 - alpha/beta hydrolase, at 549,173 to 549,817
_RS02410
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1 at 546.727 kb on - strand, within BPHYT_RS02390 at 546.836 kb on + strand at 546.836 kb on + strand at 546.837 kb on - strand at 546.837 kb on - strand at 547.007 kb on - strand, within BPHYT_RS02395 at 547.112 kb on - strand, within BPHYT_RS02395 at 547.112 kb on - strand, within BPHYT_RS02395 at 547.112 kb on - strand, within BPHYT_RS02395 at 547.608 kb on - strand at 547.745 kb on + strand, within BPHYT_RS02400 at 547.745 kb on + strand, within BPHYT_RS02400 at 547.746 kb on - strand, within BPHYT_RS02400 at 547.746 kb on - strand, within BPHYT_RS02400 at 547.747 kb on + strand, within BPHYT_RS02400 at 548.547 kb on - strand, within BPHYT_RS02400 at 548.547 kb on - strand, within BPHYT_RS02400 at 548.658 kb on - strand at 548.658 kb on - strand at 548.763 kb on + strand at 548.765 kb on + strand at 548.765 kb on + strand at 548.765 kb on + strand at 548.766 kb on - strand at 548.853 kb on + strand at 548.853 kb on + strand at 548.853 kb on + strand at 548.947 kb on - strand, within BPHYT_RS02405 at 548.947 kb on - strand, within BPHYT_RS02405 at 549.073 kb on - strand, within BPHYT_RS02405 at 549.073 kb on - strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.078 kb on + strand, within BPHYT_RS02405 at 549.079 kb on - strand, within BPHYT_RS02405 at 549.079 kb on - strand, within BPHYT_RS02405 at 549.162 kb on + strand at 549.162 kb on + strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.163 kb on - strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand, within BPHYT_RS02410 at 549.375 kb on - strand at 549.383 kb on + strand, within BPHYT_RS02410 at 549.383 kb on + strand, within BPHYT_RS02410
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 546,727 - BPHYT_RS02390 0.89 +0.5 546,836 + +0.2 546,836 + +0.0 546,837 - -1.0 546,837 - +0.2 547,007 - BPHYT_RS02395 0.19 -1.5 547,112 - BPHYT_RS02395 0.36 +0.7 547,112 - BPHYT_RS02395 0.36 -1.1 547,112 - BPHYT_RS02395 0.36 +0.0 547,608 - +0.9 547,745 + BPHYT_RS02400 0.17 -1.5 547,745 + BPHYT_RS02400 0.17 -0.3 547,746 - BPHYT_RS02400 0.17 -1.8 547,746 - BPHYT_RS02400 0.17 +0.0 547,747 + BPHYT_RS02400 0.17 -0.2 548,547 - BPHYT_RS02400 0.86 -0.1 548,547 - BPHYT_RS02400 0.86 +0.1 548,658 - +0.9 548,658 - +0.2 548,763 + +0.4 548,765 + +0.2 548,765 + +0.4 548,765 + -1.3 548,766 - -0.1 548,853 + -2.3 548,853 + -1.2 548,853 + -0.9 548,947 - BPHYT_RS02405 0.33 +1.2 548,947 - BPHYT_RS02405 0.33 +0.3 549,073 - BPHYT_RS02405 0.72 +0.0 549,073 - BPHYT_RS02405 0.72 +0.0 549,078 + BPHYT_RS02405 0.73 +0.0 549,078 + BPHYT_RS02405 0.73 -0.7 549,078 + BPHYT_RS02405 0.73 -1.0 549,078 + BPHYT_RS02405 0.73 +0.2 549,079 - BPHYT_RS02405 0.73 +0.7 549,079 - BPHYT_RS02405 0.73 +0.2 549,162 + -0.2 549,162 + -0.2 549,163 - -0.2 549,163 - -0.6 549,163 - +0.7 549,163 - +0.4 549,180 + +0.4 549,180 + +0.1 549,180 + +0.0 549,180 + -0.5 549,180 + +1.0 549,181 - -2.3 549,181 - +1.3 549,181 - -0.7 549,375 - BPHYT_RS02410 0.31 -0.7 549,375 - BPHYT_RS02410 0.31 +0.0 549,375 - -1.1 549,383 + BPHYT_RS02410 0.33 +0.4 549,383 + BPHYT_RS02410 0.33 +0.3
Or see this region's nucleotide sequence