Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01295 and BPHYT_RS01300 are separated by 87 nucleotides BPHYT_RS01300 and BPHYT_RS01305 are separated by 116 nucleotides BPHYT_RS01305 and BPHYT_RS01310 are separated by 115 nucleotides
BPHYT_RS01295: BPHYT_RS01295 - glutathione S-transferase, at 296,422 to 297,096
_RS01295
BPHYT_RS01300: BPHYT_RS01300 - ArsR family transcriptional regulator, at 297,184 to 297,879
_RS01300
BPHYT_RS01305: BPHYT_RS01305 - MFS transporter, at 297,996 to 299,387
_RS01305
BPHYT_RS01310: BPHYT_RS01310 - L-lysine 6-monooxygenase, at 299,503 to 300,828
_RS01310
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 297.059 kb on + strand at 297.094 kb on + strand at 297.193 kb on - strand at 297.196 kb on - strand at 297.339 kb on - strand, within BPHYT_RS01300 at 297.542 kb on + strand, within BPHYT_RS01300 at 297.672 kb on - strand, within BPHYT_RS01300 at 297.672 kb on - strand, within BPHYT_RS01300 at 297.811 kb on - strand at 297.864 kb on + strand at 297.864 kb on + strand at 297.864 kb on + strand at 297.865 kb on - strand at 297.897 kb on + strand at 297.907 kb on + strand at 297.976 kb on - strand at 297.993 kb on + strand at 298.045 kb on + strand at 298.082 kb on - strand at 298.085 kb on + strand at 298.085 kb on + strand at 298.085 kb on + strand at 298.086 kb on - strand at 298.086 kb on - strand at 298.139 kb on + strand, within BPHYT_RS01305 at 298.171 kb on - strand, within BPHYT_RS01305 at 298.173 kb on - strand, within BPHYT_RS01305 at 298.173 kb on - strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.382 kb on + strand, within BPHYT_RS01305 at 298.538 kb on - strand, within BPHYT_RS01305 at 298.875 kb on + strand, within BPHYT_RS01305 at 298.986 kb on + strand, within BPHYT_RS01305 at 299.025 kb on + strand, within BPHYT_RS01305 at 299.073 kb on + strand, within BPHYT_RS01305 at 299.126 kb on + strand, within BPHYT_RS01305 at 299.336 kb on - strand at 299.353 kb on + strand at 299.497 kb on + strand at 299.498 kb on - strand at 299.511 kb on + strand at 299.511 kb on + strand at 299.549 kb on + strand at 299.683 kb on + strand, within BPHYT_RS01310 at 299.719 kb on - strand, within BPHYT_RS01310 at 299.719 kb on - strand, within BPHYT_RS01310 at 299.796 kb on - strand, within BPHYT_RS01310 at 299.818 kb on + strand, within BPHYT_RS01310 at 299.818 kb on + strand, within BPHYT_RS01310 at 299.819 kb on - strand, within BPHYT_RS01310 at 300.011 kb on + strand, within BPHYT_RS01310 at 300.025 kb on + strand, within BPHYT_RS01310 at 300.026 kb on - strand, within BPHYT_RS01310 at 300.209 kb on - strand, within BPHYT_RS01310 at 300.209 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.221 kb on - strand, within BPHYT_RS01310 at 300.221 kb on - strand, within BPHYT_RS01310 at 300.229 kb on + strand, within BPHYT_RS01310 at 300.230 kb on - strand, within BPHYT_RS01310 at 300.230 kb on - strand, within BPHYT_RS01310 at 300.321 kb on + strand, within BPHYT_RS01310 at 300.325 kb on + strand, within BPHYT_RS01310
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 297,059 + -0.5 297,094 + -0.6 297,193 - +0.5 297,196 - -0.3 297,339 - BPHYT_RS01300 0.22 +0.3 297,542 + BPHYT_RS01300 0.51 -0.0 297,672 - BPHYT_RS01300 0.70 -0.1 297,672 - BPHYT_RS01300 0.70 -1.1 297,811 - -0.1 297,864 + -0.8 297,864 + -0.9 297,864 + -0.1 297,865 - -1.1 297,897 + -0.1 297,907 + +0.7 297,976 - +0.7 297,993 + +0.5 298,045 + +0.4 298,082 - -0.2 298,085 + -0.6 298,085 + +0.6 298,085 + -0.7 298,086 - +2.4 298,086 - +0.7 298,139 + BPHYT_RS01305 0.10 -1.1 298,171 - BPHYT_RS01305 0.13 -0.5 298,173 - BPHYT_RS01305 0.13 -1.7 298,173 - BPHYT_RS01305 0.13 +0.1 298,382 + BPHYT_RS01305 0.28 -2.0 298,382 + BPHYT_RS01305 0.28 -0.5 298,382 + BPHYT_RS01305 0.28 -2.0 298,382 + BPHYT_RS01305 0.28 -0.2 298,538 - BPHYT_RS01305 0.39 -0.2 298,875 + BPHYT_RS01305 0.63 +0.3 298,986 + BPHYT_RS01305 0.71 -1.3 299,025 + BPHYT_RS01305 0.74 -0.4 299,073 + BPHYT_RS01305 0.77 -0.7 299,126 + BPHYT_RS01305 0.81 -0.5 299,336 - +0.5 299,353 + +0.4 299,497 + -2.2 299,498 - -0.5 299,511 + +0.6 299,511 + +0.2 299,549 + -0.3 299,683 + BPHYT_RS01310 0.14 +0.5 299,719 - BPHYT_RS01310 0.16 -0.8 299,719 - BPHYT_RS01310 0.16 +0.7 299,796 - BPHYT_RS01310 0.22 -0.5 299,818 + BPHYT_RS01310 0.24 +2.8 299,818 + BPHYT_RS01310 0.24 -0.4 299,819 - BPHYT_RS01310 0.24 +0.2 300,011 + BPHYT_RS01310 0.38 +1.1 300,025 + BPHYT_RS01310 0.39 +1.4 300,026 - BPHYT_RS01310 0.39 -0.0 300,209 - BPHYT_RS01310 0.53 +0.1 300,209 - BPHYT_RS01310 0.53 -1.0 300,211 - BPHYT_RS01310 0.53 -0.3 300,211 - BPHYT_RS01310 0.53 -0.2 300,211 - BPHYT_RS01310 0.53 -0.6 300,221 - BPHYT_RS01310 0.54 +0.1 300,221 - BPHYT_RS01310 0.54 -0.9 300,229 + BPHYT_RS01310 0.55 -0.6 300,230 - BPHYT_RS01310 0.55 +0.5 300,230 - BPHYT_RS01310 0.55 -0.6 300,321 + BPHYT_RS01310 0.62 -0.6 300,325 + BPHYT_RS01310 0.62 -0.8
Or see this region's nucleotide sequence