Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31690

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31685 and BPHYT_RS31690 are separated by 23 nucleotidesBPHYT_RS31690 and BPHYT_RS31695 are separated by 120 nucleotides BPHYT_RS31685: BPHYT_RS31685 - D-isomer specific 2-hydroxyacid dehydrogenase, at 2,663,902 to 2,664,882 _RS31685 BPHYT_RS31690: BPHYT_RS31690 - hypothetical protein, at 2,664,906 to 2,666,057 _RS31690 BPHYT_RS31695: BPHYT_RS31695 - dihydroxy-acid dehydratase, at 2,666,178 to 2,667,965 _RS31695 Position (kb) 2664 2665 2666 2667Strain fitness (log2 ratio) -2 -1 0 1at 2664.285 kb on - strand, within BPHYT_RS31685at 2664.307 kb on - strand, within BPHYT_RS31685at 2664.582 kb on + strand, within BPHYT_RS31685at 2665.691 kb on - strand, within BPHYT_RS31690at 2665.699 kb on + strand, within BPHYT_RS31690at 2665.870 kb on + strand, within BPHYT_RS31690at 2665.871 kb on - strand, within BPHYT_RS31690at 2666.089 kb on + strandat 2666.186 kb on + strandat 2666.317 kb on + strandat 2666.846 kb on - strand, within BPHYT_RS31695at 2666.961 kb on + strand, within BPHYT_RS31695at 2666.964 kb on + strand, within BPHYT_RS31695

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,664,285 - BPHYT_RS31685 0.39 -0.8
2,664,307 - BPHYT_RS31685 0.41 +0.2
2,664,582 + BPHYT_RS31685 0.69 +1.0
2,665,691 - BPHYT_RS31690 0.68 +0.7
2,665,699 + BPHYT_RS31690 0.69 -0.9
2,665,870 + BPHYT_RS31690 0.84 +0.6
2,665,871 - BPHYT_RS31690 0.84 +0.3
2,666,089 + -2.0
2,666,186 + -1.7
2,666,317 + -0.1
2,666,846 - BPHYT_RS31695 0.37 +0.5
2,666,961 + BPHYT_RS31695 0.44 +0.2
2,666,964 + BPHYT_RS31695 0.44 +0.4

Or see this region's nucleotide sequence