Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19520

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19510 and BPHYT_RS19515 are separated by 53 nucleotidesBPHYT_RS19515 and BPHYT_RS19520 are separated by 147 nucleotidesBPHYT_RS19520 and BPHYT_RS19525 are separated by 94 nucleotidesBPHYT_RS19525 and BPHYT_RS19530 are separated by 105 nucleotidesBPHYT_RS19530 and BPHYT_RS19535 are separated by 239 nucleotides BPHYT_RS19510: BPHYT_RS19510 - adenylate cyclase, at 4,391,431 to 4,391,967 _RS19510 BPHYT_RS19515: BPHYT_RS19515 - AsnC family transcriptional regulator, at 4,392,021 to 4,392,512 _RS19515 BPHYT_RS19520: BPHYT_RS19520 - phenylalanine 4-monooxygenase, at 4,392,660 to 4,393,550 _RS19520 BPHYT_RS19525: BPHYT_RS19525 - pterin-4-alpha-carbinolamine dehydratase, at 4,393,645 to 4,393,935 _RS19525 BPHYT_RS19530: BPHYT_RS19530 - hypothetical protein, at 4,394,041 to 4,394,265 _RS19530 BPHYT_RS19535: BPHYT_RS19535 - XRE family transcriptional regulator, at 4,394,505 to 4,395,191 _RS19535 Position (kb) 4392 4393 4394Strain fitness (log2 ratio) -3 -2 -1 0 1at 4391.749 kb on + strand, within BPHYT_RS19510at 4391.749 kb on + strand, within BPHYT_RS19510at 4391.749 kb on + strand, within BPHYT_RS19510at 4391.749 kb on + strand, within BPHYT_RS19510at 4391.749 kb on + strand, within BPHYT_RS19510at 4391.750 kb on - strand, within BPHYT_RS19510at 4391.750 kb on - strand, within BPHYT_RS19510at 4391.750 kb on - strand, within BPHYT_RS19510at 4391.795 kb on + strand, within BPHYT_RS19510at 4391.795 kb on + strand, within BPHYT_RS19510at 4391.965 kb on + strandat 4391.965 kb on + strandat 4392.105 kb on + strand, within BPHYT_RS19515at 4392.106 kb on - strand, within BPHYT_RS19515at 4392.193 kb on + strand, within BPHYT_RS19515at 4392.194 kb on - strand, within BPHYT_RS19515at 4392.436 kb on - strand, within BPHYT_RS19515at 4392.436 kb on - strand, within BPHYT_RS19515at 4392.610 kb on + strandat 4392.753 kb on + strand, within BPHYT_RS19520at 4392.789 kb on + strand, within BPHYT_RS19520at 4393.035 kb on + strand, within BPHYT_RS19520at 4393.110 kb on + strand, within BPHYT_RS19520at 4393.110 kb on + strand, within BPHYT_RS19520at 4393.110 kb on + strand, within BPHYT_RS19520at 4393.111 kb on - strand, within BPHYT_RS19520at 4393.111 kb on - strand, within BPHYT_RS19520at 4393.111 kb on - strand, within BPHYT_RS19520at 4393.111 kb on - strand, within BPHYT_RS19520at 4393.111 kb on - strand, within BPHYT_RS19520at 4393.123 kb on - strand, within BPHYT_RS19520at 4393.246 kb on - strand, within BPHYT_RS19520at 4393.285 kb on - strand, within BPHYT_RS19520at 4393.405 kb on + strand, within BPHYT_RS19520at 4393.545 kb on - strandat 4393.837 kb on + strand, within BPHYT_RS19525at 4393.924 kb on - strandat 4393.924 kb on - strandat 4393.934 kb on - strandat 4393.947 kb on + strandat 4393.948 kb on - strandat 4393.948 kb on - strandat 4394.017 kb on - strandat 4394.049 kb on + strandat 4394.050 kb on - strandat 4394.066 kb on + strand, within BPHYT_RS19530at 4394.066 kb on + strand, within BPHYT_RS19530at 4394.067 kb on - strand, within BPHYT_RS19530at 4394.067 kb on - strand, within BPHYT_RS19530at 4394.131 kb on + strand, within BPHYT_RS19530at 4394.132 kb on - strand, within BPHYT_RS19530at 4394.148 kb on - strand, within BPHYT_RS19530at 4394.479 kb on + strandat 4394.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,391,749 + BPHYT_RS19510 0.59 -0.4
4,391,749 + BPHYT_RS19510 0.59 +0.2
4,391,749 + BPHYT_RS19510 0.59 -0.5
4,391,749 + BPHYT_RS19510 0.59 -0.3
4,391,749 + BPHYT_RS19510 0.59 +0.0
4,391,750 - BPHYT_RS19510 0.59 +0.9
4,391,750 - BPHYT_RS19510 0.59 +0.4
4,391,750 - BPHYT_RS19510 0.59 +0.0
4,391,795 + BPHYT_RS19510 0.68 +0.8
4,391,795 + BPHYT_RS19510 0.68 +0.3
4,391,965 + +0.2
4,391,965 + +0.6
4,392,105 + BPHYT_RS19515 0.17 +0.1
4,392,106 - BPHYT_RS19515 0.17 +0.3
4,392,193 + BPHYT_RS19515 0.35 -0.1
4,392,194 - BPHYT_RS19515 0.35 -0.6
4,392,436 - BPHYT_RS19515 0.84 +0.2
4,392,436 - BPHYT_RS19515 0.84 +0.1
4,392,610 + -1.2
4,392,753 + BPHYT_RS19520 0.10 +0.1
4,392,789 + BPHYT_RS19520 0.14 -0.2
4,393,035 + BPHYT_RS19520 0.42 +0.4
4,393,110 + BPHYT_RS19520 0.51 +0.2
4,393,110 + BPHYT_RS19520 0.51 +0.2
4,393,110 + BPHYT_RS19520 0.51 +0.6
4,393,111 - BPHYT_RS19520 0.51 +0.4
4,393,111 - BPHYT_RS19520 0.51 -0.2
4,393,111 - BPHYT_RS19520 0.51 +1.1
4,393,111 - BPHYT_RS19520 0.51 -2.8
4,393,111 - BPHYT_RS19520 0.51 +0.1
4,393,123 - BPHYT_RS19520 0.52 -0.6
4,393,246 - BPHYT_RS19520 0.66 +1.2
4,393,285 - BPHYT_RS19520 0.70 +0.1
4,393,405 + BPHYT_RS19520 0.84 +0.3
4,393,545 - -0.6
4,393,837 + BPHYT_RS19525 0.66 +0.2
4,393,924 - -1.7
4,393,924 - -0.4
4,393,934 - +0.1
4,393,947 + +1.2
4,393,948 - +1.5
4,393,948 - -0.9
4,394,017 - -0.2
4,394,049 + -1.1
4,394,050 - -0.5
4,394,066 + BPHYT_RS19530 0.11 +0.2
4,394,066 + BPHYT_RS19530 0.11 -0.7
4,394,067 - BPHYT_RS19530 0.12 -0.1
4,394,067 - BPHYT_RS19530 0.12 -0.5
4,394,131 + BPHYT_RS19530 0.40 -0.2
4,394,132 - BPHYT_RS19530 0.40 -1.5
4,394,148 - BPHYT_RS19530 0.48 -0.1
4,394,479 + +0.8
4,394,489 + -2.2

Or see this region's nucleotide sequence