Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19355

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19350 and BPHYT_RS19355 are separated by 88 nucleotidesBPHYT_RS19355 and BPHYT_RS19360 are separated by 736 nucleotides BPHYT_RS19350: BPHYT_RS19350 - amino acid ABC transporter substrate-binding protein, at 4,347,659 to 4,348,807 _RS19350 BPHYT_RS19355: BPHYT_RS19355 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 4,348,896 to 4,352,825 _RS19355 BPHYT_RS19360: BPHYT_RS19360 - primosome assembly protein PriA, at 4,353,562 to 4,355,799 _RS19360 Position (kb) 4348 4349 4350 4351 4352 4353Strain fitness (log2 ratio) -2 -1 0 1 2at 4347.921 kb on + strand, within BPHYT_RS19350at 4347.933 kb on + strand, within BPHYT_RS19350at 4347.934 kb on - strand, within BPHYT_RS19350at 4348.122 kb on + strand, within BPHYT_RS19350at 4348.122 kb on + strand, within BPHYT_RS19350at 4348.125 kb on + strand, within BPHYT_RS19350at 4348.125 kb on + strand, within BPHYT_RS19350at 4348.126 kb on - strand, within BPHYT_RS19350at 4348.198 kb on - strand, within BPHYT_RS19350at 4348.402 kb on - strand, within BPHYT_RS19350at 4348.449 kb on + strand, within BPHYT_RS19350at 4348.449 kb on + strand, within BPHYT_RS19350at 4348.645 kb on + strand, within BPHYT_RS19350at 4348.671 kb on + strand, within BPHYT_RS19350at 4348.807 kb on + strandat 4348.807 kb on + strandat 4348.808 kb on - strandat 4348.808 kb on - strandat 4348.808 kb on - strandat 4348.808 kb on - strandat 4348.808 kb on - strandat 4348.822 kb on - strandat 4348.984 kb on + strandat 4349.277 kb on - strandat 4349.308 kb on + strand, within BPHYT_RS19355at 4349.308 kb on + strand, within BPHYT_RS19355at 4349.308 kb on + strand, within BPHYT_RS19355at 4349.374 kb on + strand, within BPHYT_RS19355at 4349.375 kb on - strand, within BPHYT_RS19355at 4349.554 kb on + strand, within BPHYT_RS19355at 4349.555 kb on - strand, within BPHYT_RS19355at 4349.555 kb on - strand, within BPHYT_RS19355at 4349.650 kb on + strand, within BPHYT_RS19355at 4349.650 kb on + strand, within BPHYT_RS19355at 4349.651 kb on - strand, within BPHYT_RS19355at 4349.651 kb on - strand, within BPHYT_RS19355at 4349.651 kb on - strand, within BPHYT_RS19355at 4349.709 kb on - strand, within BPHYT_RS19355at 4350.595 kb on + strand, within BPHYT_RS19355at 4350.596 kb on - strand, within BPHYT_RS19355at 4350.686 kb on + strand, within BPHYT_RS19355at 4350.686 kb on + strand, within BPHYT_RS19355at 4350.687 kb on - strand, within BPHYT_RS19355at 4350.687 kb on - strand, within BPHYT_RS19355at 4350.687 kb on - strand, within BPHYT_RS19355at 4351.005 kb on - strand, within BPHYT_RS19355at 4351.137 kb on - strand, within BPHYT_RS19355at 4351.137 kb on - strand, within BPHYT_RS19355at 4351.190 kb on - strand, within BPHYT_RS19355at 4351.225 kb on + strand, within BPHYT_RS19355at 4351.226 kb on - strand, within BPHYT_RS19355at 4351.325 kb on - strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.327 kb on + strand, within BPHYT_RS19355at 4351.328 kb on - strand, within BPHYT_RS19355at 4351.328 kb on - strand, within BPHYT_RS19355at 4351.348 kb on + strand, within BPHYT_RS19355at 4351.348 kb on + strand, within BPHYT_RS19355at 4351.349 kb on - strand, within BPHYT_RS19355at 4351.393 kb on + strand, within BPHYT_RS19355at 4351.438 kb on + strand, within BPHYT_RS19355at 4351.439 kb on - strand, within BPHYT_RS19355at 4351.453 kb on + strand, within BPHYT_RS19355at 4351.468 kb on + strand, within BPHYT_RS19355at 4351.526 kb on - strand, within BPHYT_RS19355at 4351.588 kb on + strand, within BPHYT_RS19355at 4351.589 kb on - strand, within BPHYT_RS19355at 4351.589 kb on - strand, within BPHYT_RS19355at 4351.619 kb on - strand, within BPHYT_RS19355at 4351.873 kb on + strand, within BPHYT_RS19355at 4351.874 kb on - strand, within BPHYT_RS19355at 4351.874 kb on - strand, within BPHYT_RS19355at 4351.924 kb on + strand, within BPHYT_RS19355at 4351.934 kb on - strand, within BPHYT_RS19355at 4351.934 kb on - strand, within BPHYT_RS19355at 4351.936 kb on + strand, within BPHYT_RS19355at 4351.936 kb on + strand, within BPHYT_RS19355at 4351.936 kb on + strand, within BPHYT_RS19355at 4351.984 kb on + strand, within BPHYT_RS19355at 4351.984 kb on + strand, within BPHYT_RS19355at 4352.011 kb on + strandat 4352.011 kb on + strand, within BPHYT_RS19355at 4352.012 kb on - strand, within BPHYT_RS19355at 4352.012 kb on - strand, within BPHYT_RS19355at 4352.022 kb on - strand, within BPHYT_RS19355at 4352.139 kb on - strand, within BPHYT_RS19355at 4352.528 kb on - strandat 4352.885 kb on + strandat 4353.005 kb on + strandat 4353.006 kb on - strandat 4353.035 kb on + strandat 4353.036 kb on - strandat 4353.036 kb on - strandat 4353.067 kb on + strandat 4353.077 kb on - strandat 4353.157 kb on + strandat 4353.158 kb on - strandat 4353.158 kb on - strandat 4353.203 kb on - strandat 4353.203 kb on - strandat 4353.459 kb on - strandat 4353.459 kb on - strandat 4353.471 kb on + strandat 4353.471 kb on + strandat 4353.472 kb on - strandat 4353.472 kb on - strandat 4353.472 kb on - strandat 4353.474 kb on - strandat 4353.533 kb on + strandat 4353.534 kb on - strandat 4353.534 kb on - strandat 4353.563 kb on + strandat 4353.563 kb on + strandat 4353.563 kb on + strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,347,921 + BPHYT_RS19350 0.23 -0.4
4,347,933 + BPHYT_RS19350 0.24 +0.2
4,347,934 - BPHYT_RS19350 0.24 -2.6
4,348,122 + BPHYT_RS19350 0.40 +0.2
4,348,122 + BPHYT_RS19350 0.40 +0.2
4,348,125 + BPHYT_RS19350 0.41 -0.9
4,348,125 + BPHYT_RS19350 0.41 -0.2
4,348,126 - BPHYT_RS19350 0.41 -0.3
4,348,198 - BPHYT_RS19350 0.47 -0.4
4,348,402 - BPHYT_RS19350 0.65 -1.0
4,348,449 + BPHYT_RS19350 0.69 +0.4
4,348,449 + BPHYT_RS19350 0.69 +0.6
4,348,645 + BPHYT_RS19350 0.86 +0.3
4,348,671 + BPHYT_RS19350 0.88 +1.6
4,348,807 + -1.7
4,348,807 + -0.2
4,348,808 - -0.6
4,348,808 - -1.0
4,348,808 - +0.0
4,348,808 - -0.1
4,348,808 - +0.7
4,348,822 - -0.6
4,348,984 + +1.4
4,349,277 - -0.5
4,349,308 + BPHYT_RS19355 0.10 +0.6
4,349,308 + BPHYT_RS19355 0.10 +0.4
4,349,308 + BPHYT_RS19355 0.10 +0.7
4,349,374 + BPHYT_RS19355 0.12 +0.4
4,349,375 - BPHYT_RS19355 0.12 -0.4
4,349,554 + BPHYT_RS19355 0.17 -0.6
4,349,555 - BPHYT_RS19355 0.17 +0.5
4,349,555 - BPHYT_RS19355 0.17 +0.8
4,349,650 + BPHYT_RS19355 0.19 -0.1
4,349,650 + BPHYT_RS19355 0.19 +0.2
4,349,651 - BPHYT_RS19355 0.19 -1.5
4,349,651 - BPHYT_RS19355 0.19 -0.9
4,349,651 - BPHYT_RS19355 0.19 -0.3
4,349,709 - BPHYT_RS19355 0.21 +0.2
4,350,595 + BPHYT_RS19355 0.43 -0.4
4,350,596 - BPHYT_RS19355 0.43 -0.4
4,350,686 + BPHYT_RS19355 0.46 +0.7
4,350,686 + BPHYT_RS19355 0.46 +0.6
4,350,687 - BPHYT_RS19355 0.46 +0.6
4,350,687 - BPHYT_RS19355 0.46 +0.3
4,350,687 - BPHYT_RS19355 0.46 -0.3
4,351,005 - BPHYT_RS19355 0.54 -0.1
4,351,137 - BPHYT_RS19355 0.57 -0.2
4,351,137 - BPHYT_RS19355 0.57 -0.1
4,351,190 - BPHYT_RS19355 0.58 -0.2
4,351,225 + BPHYT_RS19355 0.59 +1.8
4,351,226 - BPHYT_RS19355 0.59 +1.4
4,351,325 - BPHYT_RS19355 0.62 -0.4
4,351,327 + BPHYT_RS19355 0.62 +1.3
4,351,327 + BPHYT_RS19355 0.62 +0.3
4,351,327 + BPHYT_RS19355 0.62 +1.0
4,351,327 + BPHYT_RS19355 0.62 +0.0
4,351,327 + BPHYT_RS19355 0.62 +0.2
4,351,327 + BPHYT_RS19355 0.62 -0.3
4,351,327 + BPHYT_RS19355 0.62 +0.4
4,351,328 - BPHYT_RS19355 0.62 +0.6
4,351,328 - BPHYT_RS19355 0.62 -2.2
4,351,348 + BPHYT_RS19355 0.62 -1.4
4,351,348 + BPHYT_RS19355 0.62 -2.3
4,351,349 - BPHYT_RS19355 0.62 +0.8
4,351,393 + BPHYT_RS19355 0.64 -1.5
4,351,438 + BPHYT_RS19355 0.65 -0.5
4,351,439 - BPHYT_RS19355 0.65 +0.2
4,351,453 + BPHYT_RS19355 0.65 -0.3
4,351,468 + BPHYT_RS19355 0.65 -0.1
4,351,526 - BPHYT_RS19355 0.67 +0.1
4,351,588 + BPHYT_RS19355 0.68 -1.5
4,351,589 - BPHYT_RS19355 0.69 +0.4
4,351,589 - BPHYT_RS19355 0.69 -0.7
4,351,619 - BPHYT_RS19355 0.69 +0.3
4,351,873 + BPHYT_RS19355 0.76 +0.4
4,351,874 - BPHYT_RS19355 0.76 -0.2
4,351,874 - BPHYT_RS19355 0.76 -0.2
4,351,924 + BPHYT_RS19355 0.77 +1.2
4,351,934 - BPHYT_RS19355 0.77 -0.9
4,351,934 - BPHYT_RS19355 0.77 -2.2
4,351,936 + BPHYT_RS19355 0.77 -0.7
4,351,936 + BPHYT_RS19355 0.77 +0.6
4,351,936 + BPHYT_RS19355 0.77 +0.6
4,351,984 + BPHYT_RS19355 0.79 -1.2
4,351,984 + BPHYT_RS19355 0.79 -1.4
4,352,011 + +1.1
4,352,011 + BPHYT_RS19355 0.79 +0.9
4,352,012 - BPHYT_RS19355 0.79 -0.4
4,352,012 - BPHYT_RS19355 0.79 -1.4
4,352,022 - BPHYT_RS19355 0.80 +0.4
4,352,139 - BPHYT_RS19355 0.83 -1.6
4,352,528 - +0.6
4,352,885 + +0.2
4,353,005 + +0.1
4,353,006 - +0.6
4,353,035 + +0.2
4,353,036 - +0.2
4,353,036 - -0.4
4,353,067 + +0.1
4,353,077 - -0.1
4,353,157 + +0.1
4,353,158 - -0.2
4,353,158 - +0.6
4,353,203 - -0.2
4,353,203 - -0.1
4,353,459 - -0.5
4,353,459 - -1.5
4,353,471 + +0.1
4,353,471 + -0.4
4,353,472 - +0.3
4,353,472 - -1.2
4,353,472 - -0.2
4,353,474 - -0.1
4,353,533 + -0.2
4,353,534 - -0.2
4,353,534 - +0.7
4,353,563 + -0.2
4,353,563 + +1.0
4,353,563 + +0.3
4,353,564 - +0.2
4,353,564 - -0.6
4,353,564 - -0.5
4,353,564 - -0.7
4,353,564 - -2.6
4,353,564 - -0.2

Or see this region's nucleotide sequence