Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19045 and BPHYT_RS19050 are separated by 286 nucleotides BPHYT_RS19050 and BPHYT_RS19055 are separated by 163 nucleotides BPHYT_RS19055 and BPHYT_RS19060 are separated by 131 nucleotides
BPHYT_RS19045: BPHYT_RS19045 - hypothetical protein, at 4,275,382 to 4,276,077
_RS19045
BPHYT_RS19050: BPHYT_RS19050 - hypothetical protein, at 4,276,364 to 4,276,675
_RS19050
BPHYT_RS19055: BPHYT_RS19055 - COF family hydrolase, at 4,276,839 to 4,277,660
_RS19055
BPHYT_RS19060: BPHYT_RS19060 - ATPase, at 4,277,792 to 4,278,673
_RS19060
Position (kb) 4276
4277
4278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.915 kb on + strand, within BPHYT_RS19045 at 4275.916 kb on - strand, within BPHYT_RS19045 at 4275.916 kb on - strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4276.083 kb on + strand at 4276.086 kb on + strand at 4276.086 kb on + strand at 4276.086 kb on + strand at 4276.087 kb on - strand at 4276.094 kb on + strand at 4276.106 kb on - strand at 4276.228 kb on + strand at 4276.229 kb on - strand at 4276.229 kb on - strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.279 kb on + strand at 4276.279 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.364 kb on - strand at 4276.438 kb on + strand, within BPHYT_RS19050 at 4276.478 kb on + strand, within BPHYT_RS19050 at 4276.479 kb on - strand, within BPHYT_RS19050 at 4276.479 kb on - strand, within BPHYT_RS19050 at 4276.520 kb on + strand, within BPHYT_RS19050 at 4276.521 kb on - strand, within BPHYT_RS19050 at 4276.524 kb on - strand, within BPHYT_RS19050 at 4276.565 kb on + strand, within BPHYT_RS19050 at 4276.586 kb on + strand, within BPHYT_RS19050 at 4276.630 kb on + strand, within BPHYT_RS19050 at 4276.692 kb on - strand at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.131 kb on + strand, within BPHYT_RS19055 at 4277.131 kb on + strand, within BPHYT_RS19055 at 4277.132 kb on - strand, within BPHYT_RS19055 at 4277.132 kb on - strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.137 kb on - strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.143 kb on - strand, within BPHYT_RS19055 at 4277.143 kb on - strand, within BPHYT_RS19055 at 4277.210 kb on - strand, within BPHYT_RS19055 at 4277.210 kb on - strand, within BPHYT_RS19055 at 4277.263 kb on + strand, within BPHYT_RS19055 at 4277.264 kb on - strand, within BPHYT_RS19055 at 4277.264 kb on - strand, within BPHYT_RS19055 at 4277.385 kb on + strand, within BPHYT_RS19055 at 4277.385 kb on + strand, within BPHYT_RS19055 at 4277.386 kb on - strand, within BPHYT_RS19055 at 4277.386 kb on - strand, within BPHYT_RS19055 at 4277.472 kb on - strand, within BPHYT_RS19055 at 4277.472 kb on - strand, within BPHYT_RS19055 at 4277.479 kb on + strand, within BPHYT_RS19055 at 4277.525 kb on - strand, within BPHYT_RS19055 at 4277.656 kb on + strand at 4277.656 kb on + strand at 4277.656 kb on + strand at 4277.657 kb on - strand at 4277.657 kb on - strand at 4277.657 kb on - strand at 4277.660 kb on + strand at 4277.660 kb on + strand at 4277.660 kb on + strand at 4277.661 kb on - strand at 4277.661 kb on - strand at 4277.689 kb on + strand at 4277.689 kb on + strand at 4277.690 kb on - strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.694 kb on - strand at 4277.881 kb on - strand, within BPHYT_RS19060 at 4277.895 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.026 kb on - strand, within BPHYT_RS19060 at 4278.060 kb on + strand, within BPHYT_RS19060 at 4278.061 kb on - strand, within BPHYT_RS19060 at 4278.360 kb on + strand, within BPHYT_RS19060 at 4278.360 kb on + strand, within BPHYT_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,275,840 - BPHYT_RS19045 0.66 -0.6 4,275,840 - BPHYT_RS19045 0.66 +0.2 4,275,840 - BPHYT_RS19045 0.66 -1.4 4,275,840 - BPHYT_RS19045 0.66 -1.2 4,275,915 + BPHYT_RS19045 0.77 +0.8 4,275,916 - BPHYT_RS19045 0.77 -0.3 4,275,916 - BPHYT_RS19045 0.77 +0.5 4,275,919 + BPHYT_RS19045 0.77 +1.4 4,275,919 + BPHYT_RS19045 0.77 -0.4 4,275,919 + BPHYT_RS19045 0.77 -0.6 4,275,919 + BPHYT_RS19045 0.77 -0.4 4,275,919 + BPHYT_RS19045 0.77 +0.6 4,275,919 + BPHYT_RS19045 0.77 +1.0 4,275,919 + BPHYT_RS19045 0.77 +0.1 4,275,920 - BPHYT_RS19045 0.77 -0.2 4,275,920 - BPHYT_RS19045 0.77 +0.1 4,275,920 - BPHYT_RS19045 0.77 -0.8 4,275,920 - BPHYT_RS19045 0.77 +0.1 4,275,920 - BPHYT_RS19045 0.77 +0.9 4,276,083 + +0.1 4,276,086 + -0.4 4,276,086 + +0.6 4,276,086 + -0.7 4,276,087 - +0.9 4,276,094 + -0.2 4,276,106 - -0.0 4,276,228 + -1.3 4,276,229 - +0.8 4,276,229 - +0.4 4,276,232 + -0.8 4,276,232 + +0.5 4,276,232 + +4.1 4,276,232 + +0.9 4,276,232 + -0.7 4,276,233 - -0.2 4,276,233 - -0.5 4,276,233 - -1.2 4,276,233 - +0.2 4,276,279 + +0.2 4,276,279 + -0.4 4,276,339 + -0.1 4,276,339 + -0.2 4,276,339 + -0.8 4,276,339 + -0.1 4,276,339 + -0.1 4,276,339 + -0.1 4,276,340 - -0.5 4,276,340 - +0.8 4,276,340 - -0.4 4,276,340 - -0.8 4,276,364 - -0.7 4,276,438 + BPHYT_RS19050 0.24 -0.4 4,276,478 + BPHYT_RS19050 0.37 -0.8 4,276,479 - BPHYT_RS19050 0.37 +0.9 4,276,479 - BPHYT_RS19050 0.37 -0.3 4,276,520 + BPHYT_RS19050 0.50 -0.2 4,276,521 - BPHYT_RS19050 0.50 +0.4 4,276,524 - BPHYT_RS19050 0.51 +1.9 4,276,565 + BPHYT_RS19050 0.64 +0.8 4,276,586 + BPHYT_RS19050 0.71 -0.4 4,276,630 + BPHYT_RS19050 0.85 +0.7 4,276,692 - -1.7 4,277,091 + BPHYT_RS19055 0.31 +0.4 4,277,091 + BPHYT_RS19055 0.31 +1.3 4,277,091 + BPHYT_RS19055 0.31 +0.9 4,277,131 + BPHYT_RS19055 0.36 +0.5 4,277,131 + BPHYT_RS19055 0.36 +0.4 4,277,132 - BPHYT_RS19055 0.36 +0.5 4,277,132 - BPHYT_RS19055 0.36 +0.5 4,277,136 + BPHYT_RS19055 0.36 +0.8 4,277,136 + BPHYT_RS19055 0.36 +0.5 4,277,136 + BPHYT_RS19055 0.36 +0.8 4,277,137 - BPHYT_RS19055 0.36 +0.0 4,277,140 + BPHYT_RS19055 0.37 +0.9 4,277,140 + BPHYT_RS19055 0.37 +0.7 4,277,140 + BPHYT_RS19055 0.37 +0.0 4,277,140 + BPHYT_RS19055 0.37 +0.3 4,277,141 - BPHYT_RS19055 0.37 +0.8 4,277,141 - BPHYT_RS19055 0.37 +1.4 4,277,141 - BPHYT_RS19055 0.37 +1.4 4,277,141 - BPHYT_RS19055 0.37 -1.5 4,277,143 - BPHYT_RS19055 0.37 +0.6 4,277,143 - BPHYT_RS19055 0.37 +0.4 4,277,210 - BPHYT_RS19055 0.45 +0.8 4,277,210 - BPHYT_RS19055 0.45 +0.6 4,277,263 + BPHYT_RS19055 0.52 +0.8 4,277,264 - BPHYT_RS19055 0.52 +0.6 4,277,264 - BPHYT_RS19055 0.52 -1.2 4,277,385 + BPHYT_RS19055 0.66 -0.2 4,277,385 + BPHYT_RS19055 0.66 +0.2 4,277,386 - BPHYT_RS19055 0.67 +0.2 4,277,386 - BPHYT_RS19055 0.67 -1.7 4,277,472 - BPHYT_RS19055 0.77 -3.4 4,277,472 - BPHYT_RS19055 0.77 +0.6 4,277,479 + BPHYT_RS19055 0.78 +1.5 4,277,525 - BPHYT_RS19055 0.83 +0.8 4,277,656 + +0.3 4,277,656 + +1.4 4,277,656 + +0.5 4,277,657 - -0.0 4,277,657 - -0.6 4,277,657 - -0.3 4,277,660 + +0.2 4,277,660 + +0.2 4,277,660 + +0.6 4,277,661 - +0.9 4,277,661 - -0.5 4,277,689 + +0.5 4,277,689 + +0.8 4,277,690 - -0.9 4,277,693 + +0.2 4,277,693 + +0.7 4,277,693 + +3.1 4,277,693 + +0.3 4,277,694 - +0.8 4,277,881 - BPHYT_RS19060 0.10 +0.4 4,277,895 + BPHYT_RS19060 0.12 -1.4 4,278,025 + BPHYT_RS19060 0.26 -1.0 4,278,025 + BPHYT_RS19060 0.26 +1.5 4,278,025 + BPHYT_RS19060 0.26 +0.4 4,278,026 - BPHYT_RS19060 0.27 -0.8 4,278,060 + BPHYT_RS19060 0.30 +0.0 4,278,061 - BPHYT_RS19060 0.30 +0.5 4,278,360 + BPHYT_RS19060 0.64 +0.1 4,278,360 + BPHYT_RS19060 0.64 -0.6
Or see this region's nucleotide sequence