Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15480

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15470 and BPHYT_RS15475 are separated by 81 nucleotidesBPHYT_RS15475 and BPHYT_RS15480 are separated by 81 nucleotidesBPHYT_RS15480 and BPHYT_RS15485 are separated by 114 nucleotidesBPHYT_RS15485 and BPHYT_RS15490 are separated by 252 nucleotides BPHYT_RS15470: BPHYT_RS15470 - tRNA (guanine-N(7)-)-methyltransferase, at 3,511,082 to 3,511,864 _RS15470 BPHYT_RS15475: BPHYT_RS15475 - UDP pyrophosphate phosphatase, at 3,511,946 to 3,512,782 _RS15475 BPHYT_RS15480: BPHYT_RS15480 - hypothetical protein, at 3,512,864 to 3,513,457 _RS15480 BPHYT_RS15485: BPHYT_RS15485 - proteinase inhibitor, at 3,513,572 to 3,513,874 _RS15485 BPHYT_RS15490: BPHYT_RS15490 - coproporphyrinogen III oxidase, at 3,514,127 to 3,515,512 _RS15490 Position (kb) 3512 3513 3514Strain fitness (log2 ratio) -1 0 1 2at 3511.947 kb on + strandat 3511.948 kb on - strandat 3511.948 kb on - strandat 3512.802 kb on - strandat 3512.889 kb on - strandat 3512.889 kb on - strandat 3512.900 kb on - strandat 3512.915 kb on - strandat 3512.968 kb on - strand, within BPHYT_RS15480at 3512.976 kb on + strand, within BPHYT_RS15480at 3513.031 kb on + strand, within BPHYT_RS15480at 3513.031 kb on + strand, within BPHYT_RS15480at 3513.031 kb on + strand, within BPHYT_RS15480at 3513.032 kb on - strand, within BPHYT_RS15480at 3513.032 kb on - strand, within BPHYT_RS15480at 3513.112 kb on - strand, within BPHYT_RS15480at 3513.277 kb on - strand, within BPHYT_RS15480at 3513.397 kb on + strand, within BPHYT_RS15480at 3513.492 kb on + strandat 3513.493 kb on - strandat 3513.567 kb on + strandat 3513.567 kb on + strandat 3513.567 kb on + strandat 3513.812 kb on - strand, within BPHYT_RS15485at 3513.938 kb on + strandat 3513.980 kb on + strandat 3514.173 kb on - strandat 3514.195 kb on + strandat 3514.195 kb on + strandat 3514.195 kb on + strandat 3514.195 kb on + strandat 3514.196 kb on - strandat 3514.196 kb on - strandat 3514.196 kb on - strandat 3514.251 kb on + strandat 3514.299 kb on - strand, within BPHYT_RS15490

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,511,947 + -0.2
3,511,948 - +1.4
3,511,948 - -0.2
3,512,802 - +0.7
3,512,889 - -0.1
3,512,889 - -0.1
3,512,900 - -1.3
3,512,915 - -0.3
3,512,968 - BPHYT_RS15480 0.18 +1.0
3,512,976 + BPHYT_RS15480 0.19 +0.4
3,513,031 + BPHYT_RS15480 0.28 -0.8
3,513,031 + BPHYT_RS15480 0.28 +0.2
3,513,031 + BPHYT_RS15480 0.28 +0.4
3,513,032 - BPHYT_RS15480 0.28 -1.3
3,513,032 - BPHYT_RS15480 0.28 +1.2
3,513,112 - BPHYT_RS15480 0.42 -0.4
3,513,277 - BPHYT_RS15480 0.70 -0.4
3,513,397 + BPHYT_RS15480 0.90 +0.3
3,513,492 + +1.7
3,513,493 - +1.9
3,513,567 + +0.6
3,513,567 + -0.4
3,513,567 + -0.3
3,513,812 - BPHYT_RS15485 0.79 -0.4
3,513,938 + +0.5
3,513,980 + -0.1
3,514,173 - +1.5
3,514,195 + +1.9
3,514,195 + +1.6
3,514,195 + +2.3
3,514,195 + +2.4
3,514,196 - -0.1
3,514,196 - +1.4
3,514,196 - +0.0
3,514,251 + +0.2
3,514,299 - BPHYT_RS15490 0.12 +1.6

Or see this region's nucleotide sequence