Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36515 and BPHYT_RS36520 are separated by 183 nucleotides BPHYT_RS36520 and BPHYT_RS36525 are separated by 73 nucleotides BPHYT_RS36525 and BPHYT_RS36530 are separated by 18 nucleotides BPHYT_RS36530 and BPHYT_RS36535 are separated by 85 nucleotides BPHYT_RS36535 and BPHYT_RS36540 are separated by 50 nucleotides
BPHYT_RS36515: BPHYT_RS36515 - hypothetical protein, at 109,961 to 110,335
_RS36515
BPHYT_RS36520: BPHYT_RS36520 - hypothetical protein, at 110,519 to 110,869
_RS36520
BPHYT_RS36525: BPHYT_RS36525 - hypothetical protein, at 110,943 to 111,149
_RS36525
BPHYT_RS36530: BPHYT_RS36530 - hypothetical protein, at 111,168 to 111,620
_RS36530
BPHYT_RS36535: BPHYT_RS36535 - hypothetical protein, at 111,706 to 111,972
_RS36535
BPHYT_RS36540: BPHYT_RS36540 - hypothetical protein, at 112,023 to 112,214
_RS36540
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1 at 110.166 kb on - strand, within BPHYT_RS36515 at 110.189 kb on - strand, within BPHYT_RS36515 at 110.189 kb on - strand, within BPHYT_RS36515 at 110.270 kb on + strand, within BPHYT_RS36515 at 110.270 kb on + strand, within BPHYT_RS36515 at 110.271 kb on - strand, within BPHYT_RS36515 at 110.778 kb on + strand, within BPHYT_RS36520 at 111.048 kb on + strand, within BPHYT_RS36525 at 111.164 kb on + strand at 111.270 kb on - strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.402 kb on - strand, within BPHYT_RS36530 at 111.411 kb on + strand, within BPHYT_RS36530 at 111.536 kb on - strand, within BPHYT_RS36530 at 111.618 kb on + strand at 111.619 kb on - strand at 111.682 kb on - strand at 111.682 kb on - strand at 111.691 kb on + strand at 111.728 kb on + strand at 111.886 kb on + strand, within BPHYT_RS36535 at 111.886 kb on + strand, within BPHYT_RS36535 at 111.887 kb on - strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 112.012 kb on - strand at 112.028 kb on + strand at 112.074 kb on + strand, within BPHYT_RS36540
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 110,166 - BPHYT_RS36515 0.55 -0.5 110,189 - BPHYT_RS36515 0.61 -1.0 110,189 - BPHYT_RS36515 0.61 -0.6 110,270 + BPHYT_RS36515 0.82 +0.3 110,270 + BPHYT_RS36515 0.82 +0.0 110,271 - BPHYT_RS36515 0.83 +0.9 110,778 + BPHYT_RS36520 0.74 -0.1 111,048 + BPHYT_RS36525 0.51 -1.9 111,164 + +0.8 111,270 - BPHYT_RS36530 0.23 +0.3 111,318 + BPHYT_RS36530 0.33 -1.2 111,318 + BPHYT_RS36530 0.33 -1.5 111,319 - BPHYT_RS36530 0.33 +0.8 111,319 - BPHYT_RS36530 0.33 -2.7 111,319 - BPHYT_RS36530 0.33 -1.0 111,402 - BPHYT_RS36530 0.52 -1.8 111,411 + BPHYT_RS36530 0.54 -2.1 111,536 - BPHYT_RS36530 0.81 -0.0 111,618 + -1.0 111,619 - -1.2 111,682 - +0.2 111,682 - -0.5 111,691 + -1.8 111,728 + +0.4 111,886 + BPHYT_RS36535 0.67 -0.8 111,886 + BPHYT_RS36535 0.67 -0.7 111,887 - BPHYT_RS36535 0.68 +0.6 111,930 + BPHYT_RS36535 0.84 +0.3 111,930 + BPHYT_RS36535 0.84 +0.3 111,930 + BPHYT_RS36535 0.84 -1.0 112,012 - -0.1 112,028 + -0.1 112,074 + BPHYT_RS36540 0.27 +1.2
Or see this region's nucleotide sequence