Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03425 and BPHYT_RS03430 are separated by 107 nucleotides BPHYT_RS03430 and BPHYT_RS03435 are separated by 279 nucleotides BPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotides
BPHYT_RS03425: BPHYT_RS03425 - preprotein translocase subunit SecF, at 773,006 to 773,956
_RS03425
BPHYT_RS03430: BPHYT_RS03430 - major facilitator transporter, at 774,064 to 775,341
_RS03430
BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190
_RS03435
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 773.965 kb on + strand at 774.033 kb on + strand at 774.034 kb on - strand at 774.137 kb on + strand at 774.225 kb on + strand, within BPHYT_RS03430 at 774.226 kb on - strand, within BPHYT_RS03430 at 774.228 kb on - strand, within BPHYT_RS03430 at 774.228 kb on - strand, within BPHYT_RS03430 at 774.374 kb on + strand, within BPHYT_RS03430 at 774.579 kb on - strand, within BPHYT_RS03430 at 774.579 kb on - strand, within BPHYT_RS03430 at 774.720 kb on - strand, within BPHYT_RS03430 at 775.008 kb on - strand, within BPHYT_RS03430 at 775.232 kb on + strand at 775.438 kb on + strand at 775.622 kb on + strand at 775.622 kb on + strand at 775.623 kb on - strand at 775.676 kb on + strand at 775.701 kb on - strand, within BPHYT_RS03435 at 775.869 kb on + strand, within BPHYT_RS03435 at 775.881 kb on + strand, within BPHYT_RS03435 at 775.882 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 776.100 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 773,965 + -0.4 774,033 + +0.4 774,034 - +0.1 774,137 + +0.5 774,225 + BPHYT_RS03430 0.13 +0.1 774,226 - BPHYT_RS03430 0.13 +2.3 774,228 - BPHYT_RS03430 0.13 +0.6 774,228 - BPHYT_RS03430 0.13 +0.7 774,374 + BPHYT_RS03430 0.24 +0.4 774,579 - BPHYT_RS03430 0.40 -0.2 774,579 - BPHYT_RS03430 0.40 +0.9 774,720 - BPHYT_RS03430 0.51 -0.4 775,008 - BPHYT_RS03430 0.74 -1.9 775,232 + +0.0 775,438 + +0.1 775,622 + -0.7 775,622 + +0.2 775,623 - +0.4 775,676 + +0.2 775,701 - BPHYT_RS03435 0.14 +0.5 775,869 + BPHYT_RS03435 0.44 +0.6 775,881 + BPHYT_RS03435 0.46 +0.3 775,882 - BPHYT_RS03435 0.46 +0.1 775,884 - BPHYT_RS03435 0.46 -0.7 775,884 - BPHYT_RS03435 0.46 -1.2 775,884 - BPHYT_RS03435 0.46 +0.3 775,884 - BPHYT_RS03435 0.46 +1.8 775,884 - BPHYT_RS03435 0.46 +2.2 775,884 - BPHYT_RS03435 0.46 -1.0 775,884 - BPHYT_RS03435 0.46 -0.4 776,100 - BPHYT_RS03435 0.84 +0.6 776,124 - BPHYT_RS03435 0.88 +0.3 776,124 - BPHYT_RS03435 0.88 -0.5 776,124 - BPHYT_RS03435 0.88 -0.7
Or see this region's nucleotide sequence