Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34700

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,392,110	+				+0.2
3,392,316	-				-0.3
3,392,323	+				+0.4
3,392,324	-				-0.2
3,392,404	-				+0.3
3,392,470	-				+0.4
3,392,566	-				-0.1
3,392,597	+				-0.1
3,392,615	+				-0.1
3,392,634	+				+0.7
3,392,643	-				+0.9
3,392,828	+				+0.2
3,392,927	-				+0.4
3,392,927	-				-0.0
3,392,944	-				-0.1
3,392,970	+				+0.5
3,392,971	-				-0.1
3,392,988	-				-0.2
3,393,010	+				-1.3
3,393,011	-				+2.2
3,393,011	-				-0.1
3,393,011	-				+0.0
3,393,011	-				-0.5
3,393,011	-				-0.0
3,393,018	+				+0.1
3,393,090	-				+0.2
3,393,122	-				-0.6
3,393,178	+		BPHYT_RS34700	0.19	-0.3
3,393,267	-		BPHYT_RS34700	0.44	+1.9
3,393,458	+				+0.4
3,393,492	-				-0.2
3,393,492	-				-0.4
3,393,614	+		BPHYT_RS34705	0.13	-0.2
3,393,701	+		BPHYT_RS34705	0.21	+1.0
3,393,701	+		BPHYT_RS34705	0.21	+0.4
3,393,968	+		BPHYT_RS34705	0.48	-0.5
3,394,134	-		BPHYT_RS34705	0.65	-0.7
3,394,188	-		BPHYT_RS34705	0.71	-0.3
3,394,323	+		BPHYT_RS34705	0.84	-0.2
3,394,324	-		BPHYT_RS34705	0.84	+0.5
3,394,324	-		BPHYT_RS34705	0.84	+0.3