Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29225

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
2,112,160	+		BPHYT_RS29220	0.35	+0.2
2,112,207	-		BPHYT_RS29220	0.41	-0.0
2,112,208	+		BPHYT_RS29220	0.41	+0.4
2,112,252	-		BPHYT_RS29220	0.47	-0.2
2,112,458	-		BPHYT_RS29220	0.75	+0.7
2,112,560	-		BPHYT_RS29220	0.89	-0.6
2,112,578	-				-0.5
2,112,772	-				-0.0
2,112,829	-				-0.1
2,112,894	+				+0.2
2,113,101	+		BPHYT_RS29225	0.13	+0.3
2,113,114	-		BPHYT_RS29225	0.14	-0.3
2,113,349	+		BPHYT_RS29225	0.25	+0.1
2,113,401	+		BPHYT_RS29225	0.28	-0.3
2,114,050	-		BPHYT_RS29225	0.59	+0.2
2,114,050	-		BPHYT_RS29225	0.59	-0.3
2,114,999	-				+1.0
2,115,040	+				+0.1
2,115,436	-		BPHYT_RS29230	0.51	-1.0
2,115,442	+		BPHYT_RS29230	0.51	+0.0
2,115,442	+		BPHYT_RS29230	0.51	+0.1