Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25130 and BPHYT_RS25135 are separated by 3 nucleotides BPHYT_RS25135 and BPHYT_RS25140 overlap by 4 nucleotides BPHYT_RS25140 and BPHYT_RS25145 are separated by 120 nucleotides BPHYT_RS25145 and BPHYT_RS25150 are separated by 17 nucleotides
BPHYT_RS25130: BPHYT_RS25130 - MFS transporter, at 1,210,793 to 1,212,211
_RS25130
BPHYT_RS25135: BPHYT_RS25135 - hypothetical protein, at 1,212,215 to 1,212,658
_RS25135
BPHYT_RS25140: BPHYT_RS25140 - hypothetical protein, at 1,212,655 to 1,213,164
_RS25140
BPHYT_RS25145: BPHYT_RS25145 - cupin, at 1,213,285 to 1,213,686
_RS25145
BPHYT_RS25150: BPHYT_RS25150 - class C beta-lactamase, at 1,213,704 to 1,214,870
_RS25150
Position (kb) 1212
1213
1214 Strain fitness (log2 ratio) -2
-1
0
1 at 1211.822 kb on + strand, within BPHYT_RS25130 at 1211.826 kb on + strand, within BPHYT_RS25130 at 1212.020 kb on + strand, within BPHYT_RS25130 at 1212.021 kb on - strand, within BPHYT_RS25130 at 1212.216 kb on + strand at 1212.519 kb on + strand, within BPHYT_RS25135 at 1212.629 kb on - strand at 1213.031 kb on - strand, within BPHYT_RS25140 at 1213.082 kb on + strand, within BPHYT_RS25140 at 1213.193 kb on + strand at 1213.240 kb on - strand at 1213.305 kb on + strand at 1213.305 kb on + strand at 1213.373 kb on - strand, within BPHYT_RS25145 at 1213.396 kb on - strand, within BPHYT_RS25145 at 1213.473 kb on - strand, within BPHYT_RS25145 at 1213.740 kb on - strand at 1213.741 kb on + strand at 1214.137 kb on + strand, within BPHYT_RS25150
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,211,822 + BPHYT_RS25130 0.73 -0.8 1,211,826 + BPHYT_RS25130 0.73 -0.7 1,212,020 + BPHYT_RS25130 0.86 -0.3 1,212,021 - BPHYT_RS25130 0.87 +0.3 1,212,216 + -2.0 1,212,519 + BPHYT_RS25135 0.68 +1.0 1,212,629 - +1.0 1,213,031 - BPHYT_RS25140 0.74 -1.2 1,213,082 + BPHYT_RS25140 0.84 -0.9 1,213,193 + -1.5 1,213,240 - +0.5 1,213,305 + +0.7 1,213,305 + +0.1 1,213,373 - BPHYT_RS25145 0.22 -0.8 1,213,396 - BPHYT_RS25145 0.28 +0.4 1,213,473 - BPHYT_RS25145 0.47 +0.1 1,213,740 - +0.1 1,213,741 + -0.6 1,214,137 + BPHYT_RS25150 0.37 +0.1
Or see this region's nucleotide sequence