Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20290 and BPHYT_RS20295 overlap by 4 nucleotides BPHYT_RS20295 and BPHYT_RS20300 are separated by 415 nucleotides
BPHYT_RS20290: BPHYT_RS20290 - LysR family transcriptional regulator, at 111,631 to 112,569
_RS20290
BPHYT_RS20295: BPHYT_RS20295 - ligand-gated channel, at 112,566 to 114,749
_RS20295
BPHYT_RS20300: BPHYT_RS20300 - isocitrate dehydrogenase, at 115,165 to 117,393
_RS20300
Position (kb) 112
113
114
115 Strain fitness (log2 ratio) -2
-1
0
1 at 111.826 kb on + strand, within BPHYT_RS20290 at 111.829 kb on + strand, within BPHYT_RS20290 at 112.368 kb on - strand, within BPHYT_RS20290 at 112.621 kb on + strand at 112.621 kb on + strand at 112.625 kb on - strand at 112.792 kb on + strand, within BPHYT_RS20295 at 112.793 kb on - strand, within BPHYT_RS20295 at 112.793 kb on - strand, within BPHYT_RS20295 at 112.879 kb on + strand, within BPHYT_RS20295 at 113.051 kb on - strand, within BPHYT_RS20295 at 113.051 kb on - strand, within BPHYT_RS20295 at 113.056 kb on + strand, within BPHYT_RS20295 at 113.164 kb on + strand, within BPHYT_RS20295 at 113.215 kb on + strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.225 kb on - strand, within BPHYT_RS20295 at 113.291 kb on - strand, within BPHYT_RS20295 at 113.321 kb on - strand, within BPHYT_RS20295 at 113.343 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.509 kb on + strand, within BPHYT_RS20295 at 113.510 kb on - strand, within BPHYT_RS20295 at 113.539 kb on + strand, within BPHYT_RS20295 at 113.638 kb on + strand, within BPHYT_RS20295 at 113.639 kb on - strand, within BPHYT_RS20295 at 113.639 kb on - strand, within BPHYT_RS20295 at 113.644 kb on + strand, within BPHYT_RS20295 at 113.644 kb on + strand, within BPHYT_RS20295 at 113.663 kb on - strand, within BPHYT_RS20295 at 113.825 kb on - strand, within BPHYT_RS20295 at 113.935 kb on + strand, within BPHYT_RS20295 at 114.136 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.220 kb on + strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.844 kb on - strand at 114.868 kb on + strand at 114.923 kb on - strand at 114.937 kb on - strand at 114.937 kb on - strand at 115.026 kb on - strand at 115.041 kb on + strand at 115.043 kb on + strand at 115.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 111,826 + BPHYT_RS20290 0.21 +0.1 111,829 + BPHYT_RS20290 0.21 +0.2 112,368 - BPHYT_RS20290 0.78 -2.1 112,621 + -0.6 112,621 + -0.5 112,625 - -1.2 112,792 + BPHYT_RS20295 0.10 -1.2 112,793 - BPHYT_RS20295 0.10 -0.7 112,793 - BPHYT_RS20295 0.10 +0.4 112,879 + BPHYT_RS20295 0.14 -1.1 113,051 - BPHYT_RS20295 0.22 -0.6 113,051 - BPHYT_RS20295 0.22 -1.4 113,056 + BPHYT_RS20295 0.22 -1.0 113,164 + BPHYT_RS20295 0.27 -1.1 113,215 + BPHYT_RS20295 0.30 -1.5 113,216 - BPHYT_RS20295 0.30 -0.4 113,216 - BPHYT_RS20295 0.30 -1.6 113,216 - BPHYT_RS20295 0.30 -1.4 113,225 - BPHYT_RS20295 0.30 -0.9 113,291 - BPHYT_RS20295 0.33 -1.3 113,321 - BPHYT_RS20295 0.35 -0.9 113,343 - BPHYT_RS20295 0.36 -0.9 113,379 - BPHYT_RS20295 0.37 -0.4 113,379 - BPHYT_RS20295 0.37 -0.3 113,379 - BPHYT_RS20295 0.37 -0.9 113,379 - BPHYT_RS20295 0.37 -1.6 113,509 + BPHYT_RS20295 0.43 -1.3 113,510 - BPHYT_RS20295 0.43 +0.2 113,539 + BPHYT_RS20295 0.45 -0.2 113,638 + BPHYT_RS20295 0.49 -0.8 113,639 - BPHYT_RS20295 0.49 +0.4 113,639 - BPHYT_RS20295 0.49 -1.9 113,644 + BPHYT_RS20295 0.49 -1.1 113,644 + BPHYT_RS20295 0.49 -1.3 113,663 - BPHYT_RS20295 0.50 -1.4 113,825 - BPHYT_RS20295 0.58 -1.5 113,935 + BPHYT_RS20295 0.63 -1.3 114,136 + BPHYT_RS20295 0.72 -1.5 114,187 + BPHYT_RS20295 0.74 -0.9 114,187 + BPHYT_RS20295 0.74 -1.1 114,188 - BPHYT_RS20295 0.74 -2.4 114,188 - BPHYT_RS20295 0.74 +0.4 114,220 + BPHYT_RS20295 0.76 -0.2 114,419 - BPHYT_RS20295 0.85 -0.3 114,419 - BPHYT_RS20295 0.85 -1.2 114,844 - -0.4 114,868 + -0.0 114,923 - +0.5 114,937 - +0.3 114,937 - -0.2 115,026 - +0.4 115,041 + +0.4 115,043 + -0.3 115,137 + +0.3
Or see this region's nucleotide sequence