Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16555

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,750,886	+				+0.4
3,750,990	+				-0.2
3,751,168	-		BPHYT_RS16550	0.31	-1.7
3,751,182	+		BPHYT_RS16550	0.33	+0.2
3,751,183	-		BPHYT_RS16550	0.33	+0.0
3,751,183	-		BPHYT_RS16550	0.33	+1.9
3,751,183	-		BPHYT_RS16550	0.33	+0.6
3,751,183	-		BPHYT_RS16550	0.33	+0.3
3,751,183	-		BPHYT_RS16550	0.33	-0.5
3,751,431	+		BPHYT_RS16550	0.66	+1.2
3,751,431	+		BPHYT_RS16550	0.66	+0.4
3,751,509	+		BPHYT_RS16550	0.77	-0.0
3,751,648	+				-0.4
3,751,648	+				-0.6
3,751,649	-				-0.7
3,751,725	+				-0.8
3,751,726	-				-0.5
3,751,831	+				-0.1
3,751,831	+				+0.1
3,751,832	-				-0.3
3,751,832	-				-1.7
3,751,832	-				-0.6
3,751,837	+				+0.3
3,751,893	+				+0.6
3,752,163	+		BPHYT_RS16555	0.32	-0.4
3,752,163	+		BPHYT_RS16555	0.32	-0.1
3,752,163	+		BPHYT_RS16555	0.32	-0.6
3,752,163	+		BPHYT_RS16555	0.32	-0.2
3,752,489	+		BPHYT_RS16555	0.68	-0.1
3,752,490	-		BPHYT_RS16555	0.68	-0.6
3,752,924	+				+0.0