Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16315

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,700,975	+		BPHYT_RS16305	0.69	-2.4
3,701,322	+				-0.1
3,701,483	+		BPHYT_RS16310	0.35	-0.5
3,701,510	+		BPHYT_RS16310	0.39	-1.2
3,701,510	+		BPHYT_RS16310	0.39	+0.8
3,701,510	+		BPHYT_RS16310	0.39	-0.9
3,701,510	+		BPHYT_RS16310	0.39	+0.2
3,701,510	+		BPHYT_RS16310	0.39	+0.1
3,701,511	-		BPHYT_RS16310	0.39	-0.1
3,701,511	-		BPHYT_RS16310	0.39	+0.4
3,701,527	+		BPHYT_RS16310	0.42	-0.1
3,701,528	-		BPHYT_RS16310	0.42	-0.1
3,701,784	+		BPHYT_RS16310	0.86	-0.1
3,701,785	-		BPHYT_RS16310	0.86	-0.2
3,701,830	+				-0.8
3,701,831	-				-0.3
3,701,871	+				+0.3
3,702,024	+				-0.6
3,702,024	+				-0.4
3,702,024	+				-2.2
3,702,024	+				+0.2
3,702,024	+				-0.0
3,702,025	-				+0.4
3,702,025	-				+0.1
3,702,025	-				-1.0
3,702,027	+				+0.3
3,702,028	-				+0.6
3,702,263	-		BPHYT_RS16315	0.19	-1.8
3,702,579	+		BPHYT_RS16315	0.37	-0.5
3,702,633	+		BPHYT_RS16315	0.40	+0.5
3,702,633	+		BPHYT_RS16315	0.40	-0.2
3,702,634	-		BPHYT_RS16315	0.40	-0.3
3,702,634	-		BPHYT_RS16315	0.40	+0.2
3,702,634	-		BPHYT_RS16315	0.40	+0.0
3,702,729	+		BPHYT_RS16315	0.46	-0.3
3,702,729	+		BPHYT_RS16315	0.46	-0.8
3,702,730	-		BPHYT_RS16315	0.46	+0.5
3,702,730	-		BPHYT_RS16315	0.46	-0.2
3,702,804	+		BPHYT_RS16315	0.50	+0.8
3,702,892	-		BPHYT_RS16315	0.55	+0.9
3,702,969	-		BPHYT_RS16315	0.60	-0.4
3,702,988	-		BPHYT_RS16315	0.61	-1.2
3,702,988	-		BPHYT_RS16315	0.61	+0.1
3,703,203	+		BPHYT_RS16315	0.74	+1.0
3,703,204	-		BPHYT_RS16315	0.74	-0.4
3,703,204	-		BPHYT_RS16315	0.74	+0.1
3,703,204	-		BPHYT_RS16315	0.74	+0.1
3,703,251	+		BPHYT_RS16315	0.76	-0.3
3,703,252	-		BPHYT_RS16315	0.76	+0.0
3,703,278	+		BPHYT_RS16315	0.78	-0.5
3,703,342	+		BPHYT_RS16315	0.82	-0.3
3,703,423	+		BPHYT_RS16315	0.86	-0.1
3,703,455	+		BPHYT_RS16315	0.88	-0.1
3,703,456	-		BPHYT_RS16315	0.88	-0.0
3,703,564	+				-0.8
3,703,703	-				-0.5
3,703,703	-				-0.1
3,703,727	+				+0.7
3,703,727	+				-1.5
3,703,868	+				-0.6
3,703,868	+				-0.5
3,703,868	+				+1.4
3,703,868	+				+0.6
3,703,869	-				-0.3
3,703,873	+				-0.4
3,703,874	-				+0.1
3,703,885	+				-0.2
3,703,940	+				-0.7
3,703,940	+				-2.8
3,703,940	+				+0.8
3,704,277	+		BPHYT_RS16320	0.79	-0.4
3,704,278	-		BPHYT_RS16320	0.79	+0.2
3,704,278	-		BPHYT_RS16320	0.79	-0.0
3,704,278	-		BPHYT_RS16320	0.79	+0.7
3,704,408	+				+0.7
3,704,467	+				+0.2
3,704,468	-				+0.6
3,704,593	-				+0.2