Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13685

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,117,064	+				-1.2
3,117,081	+				+0.2
3,117,081	+				+0.2
3,117,081	+				+1.1
3,117,081	+				-0.1
3,117,081	+				-0.6
3,117,081	+				+0.2
3,117,082	-				-0.3
3,117,082	-				+0.3
3,117,082	-				-0.3
3,117,128	+				-1.2
3,117,129	-				-0.1
3,117,165	+				+0.2
3,117,165	+				+0.4
3,117,166	-				+0.4
3,117,166	-				+0.6
3,117,166	-				+0.1
3,117,166	-				-0.3
3,117,262	-				-0.8
3,117,262	-				-0.1
3,117,297	+				-1.6
3,117,301	+				+0.1
3,117,301	+				-0.1
3,117,301	+				-0.4
3,117,301	+				-1.8
3,117,302	-				+0.4
3,117,305	+				-0.1
3,117,306	-				+0.3
3,117,404	+		BPHYT_RS13680	0.15	-0.8
3,117,404	+		BPHYT_RS13680	0.15	+0.1
3,117,404	+		BPHYT_RS13680	0.15	-0.3
3,117,474	+		BPHYT_RS13680	0.28	+0.0
3,117,474	+		BPHYT_RS13680	0.28	-0.2
3,117,475	-		BPHYT_RS13680	0.28	-0.2
3,117,544	-		BPHYT_RS13680	0.41	-0.3
3,117,793	-		BPHYT_RS13680	0.86	+0.4
3,117,816	+				-0.5
3,117,816	+				+0.3
3,118,007	+				-0.8
3,118,008	-				+1.2
3,118,010	+				-0.2
3,118,010	+				+0.3
3,118,010	+				+0.2
3,118,125	-		BPHYT_RS13685	0.27	+0.4
3,118,344	-		BPHYT_RS13685	0.78	-0.3
3,118,352	+		BPHYT_RS13685	0.79	+0.2
3,118,353	-		BPHYT_RS13685	0.80	-0.9
3,118,353	-		BPHYT_RS13685	0.80	-0.2
3,118,452	-				-0.1
3,118,511	+				-1.2
3,118,511	+				-0.3
3,118,816	+		BPHYT_RS13690	0.24	-0.1
3,118,817	-		BPHYT_RS13690	0.24	+0.1
3,118,818	+		BPHYT_RS13690	0.24	-0.1
3,118,818	+		BPHYT_RS13690	0.24	+0.6
3,118,818	+		BPHYT_RS13690	0.24	-0.9
3,118,819	-		BPHYT_RS13690	0.25	-0.2
3,119,070	+		BPHYT_RS13690	0.57	-0.5
3,119,070	+		BPHYT_RS13690	0.57	+0.0
3,119,071	-		BPHYT_RS13690	0.57	+0.1
3,119,071	-		BPHYT_RS13690	0.57	+0.8
3,119,071	-		BPHYT_RS13690	0.57	+0.4
3,119,429	+				+0.3
3,119,430	-				+1.0