Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10310

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
2,343,381	+				+0.3
2,343,381	+				-0.1
2,343,386	-				-0.5
2,343,386	-				+0.2
2,343,685	+				-0.3
2,343,852	-		BPHYT_RS10305	0.75	-0.3
2,344,070	-				-0.0
2,344,078	-				-0.1
2,344,097	+				-0.5
2,344,109	-				-0.5
2,344,167	-				-0.1
2,344,224	+				-0.4
2,344,224	+				+0.0
2,344,245	+				+0.9
2,344,246	-				-0.7
2,344,246	-				+1.6
2,344,313	-				+0.1
2,344,348	-				-1.3
2,344,660	+		BPHYT_RS10310	0.13	-0.8
2,344,660	+		BPHYT_RS10310	0.13	+1.0
2,344,661	-		BPHYT_RS10310	0.13	-0.2
2,344,787	-		BPHYT_RS10310	0.18	-0.5
2,345,098	+		BPHYT_RS10310	0.32	-0.7
2,345,428	+		BPHYT_RS10310	0.47	-0.3
2,345,687	-		BPHYT_RS10310	0.58	-0.1
2,346,196	+		BPHYT_RS10310	0.81	-0.1
2,346,541	+				-0.3
2,346,541	+				-0.5
2,346,541	+				+0.2
2,346,541	+				-0.7
2,346,541	+				-0.6
2,346,542	-				+0.5
2,346,542	-				-0.5
2,346,699	+				+0.1
2,346,699	+				+0.0
2,346,699	+				+0.5
2,347,040	-		BPHYT_RS10315	0.21	-0.2
2,347,066	-		BPHYT_RS10315	0.24	+0.2
2,347,069	+		BPHYT_RS10315	0.25	-0.5
2,347,069	+		BPHYT_RS10315	0.25	+0.1
2,347,069	+		BPHYT_RS10315	0.25	+0.5
2,347,544	+				-0.3