Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05040 and BPHYT_RS05045 are separated by 81 nucleotides BPHYT_RS05045 and BPHYT_RS05050 are separated by 138 nucleotides
BPHYT_RS05040: BPHYT_RS05040 - sugar ABC transporter ATPase, at 1,161,758 to 1,162,873
_RS05040
BPHYT_RS05045: BPHYT_RS05045 - transcriptional regulator, at 1,162,955 to 1,163,872
_RS05045
BPHYT_RS05050: BPHYT_RS05050 - glutathione S-transferase, at 1,164,011 to 1,164,670
_RS05050
Position (kb) 1162
1163
1164 Strain fitness (log2 ratio) -1
0
1
2 at 1162.010 kb on + strand, within BPHYT_RS05040 at 1162.011 kb on - strand, within BPHYT_RS05040 at 1162.019 kb on + strand, within BPHYT_RS05040 at 1162.268 kb on - strand, within BPHYT_RS05040 at 1162.822 kb on + strand at 1162.823 kb on - strand at 1162.823 kb on - strand at 1162.893 kb on + strand at 1163.055 kb on + strand, within BPHYT_RS05045 at 1163.216 kb on + strand, within BPHYT_RS05045 at 1163.298 kb on + strand, within BPHYT_RS05045 at 1163.299 kb on - strand, within BPHYT_RS05045 at 1163.581 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.767 kb on + strand, within BPHYT_RS05045 at 1163.846 kb on + strand at 1163.901 kb on + strand at 1163.902 kb on - strand at 1163.902 kb on - strand at 1163.920 kb on + strand at 1163.921 kb on - strand at 1163.922 kb on + strand at 1164.255 kb on + strand, within BPHYT_RS05050 at 1164.330 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.361 kb on - strand at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.634 kb on - strand at 1164.654 kb on + strand at 1164.691 kb on - strand at 1164.782 kb on + strand at 1164.802 kb on - strand at 1164.817 kb on + strand at 1164.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,162,010 + BPHYT_RS05040 0.23 +0.0 1,162,011 - BPHYT_RS05040 0.23 +1.1 1,162,019 + BPHYT_RS05040 0.23 +0.5 1,162,268 - BPHYT_RS05040 0.46 +0.2 1,162,822 + +0.4 1,162,823 - +0.2 1,162,823 - +0.4 1,162,893 + +2.0 1,163,055 + BPHYT_RS05045 0.11 -0.4 1,163,216 + BPHYT_RS05045 0.28 +0.7 1,163,298 + BPHYT_RS05045 0.37 -0.2 1,163,299 - BPHYT_RS05045 0.37 -0.6 1,163,581 + BPHYT_RS05045 0.68 -0.0 1,163,676 + BPHYT_RS05045 0.79 -0.3 1,163,676 + BPHYT_RS05045 0.79 +0.1 1,163,676 + BPHYT_RS05045 0.79 -0.0 1,163,767 + BPHYT_RS05045 0.88 -0.3 1,163,846 + -0.5 1,163,901 + +0.8 1,163,902 - +0.2 1,163,902 - -0.1 1,163,920 + -0.7 1,163,921 - +1.6 1,163,922 + -0.2 1,164,255 + BPHYT_RS05050 0.37 -0.6 1,164,330 + BPHYT_RS05050 0.48 -1.0 1,164,360 + BPHYT_RS05050 0.53 +0.1 1,164,360 + BPHYT_RS05050 0.53 -0.1 1,164,361 - +0.4 1,164,361 - BPHYT_RS05050 0.53 +0.1 1,164,361 - BPHYT_RS05050 0.53 -0.6 1,164,361 - BPHYT_RS05050 0.53 +0.7 1,164,634 - -0.4 1,164,654 + -0.1 1,164,691 - -0.2 1,164,782 + -0.2 1,164,802 - +0.3 1,164,817 + +0.3 1,164,853 - -0.6
Or see this region's nucleotide sequence