Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23965

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23960 and BPHYT_RS23965 are separated by 28 nucleotidesBPHYT_RS23965 and BPHYT_RS23970 overlap by 1 nucleotides BPHYT_RS23960: BPHYT_RS23960 - sugar ABC transporter, at 940,327 to 941,385 _RS23960 BPHYT_RS23965: BPHYT_RS23965 - iron ABC transporter permease, at 941,414 to 943,018 _RS23965 BPHYT_RS23970: BPHYT_RS23970 - iron ABC transporter substrate-binding protein, at 943,018 to 944,061 _RS23970 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -1 0 1at 940.506 kb on - strand, within BPHYT_RS23960at 940.646 kb on - strand, within BPHYT_RS23960at 941.800 kb on - strand, within BPHYT_RS23965at 942.351 kb on + strand, within BPHYT_RS23965at 942.388 kb on + strand, within BPHYT_RS23965at 942.568 kb on - strand, within BPHYT_RS23965at 942.568 kb on - strand, within BPHYT_RS23965at 943.370 kb on + strand, within BPHYT_RS23970at 943.371 kb on - strand, within BPHYT_RS23970at 943.634 kb on + strand, within BPHYT_RS23970at 943.634 kb on + strand, within BPHYT_RS23970

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
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940,506 - BPHYT_RS23960 0.17 +0.1
940,646 - BPHYT_RS23960 0.30 +0.1
941,800 - BPHYT_RS23965 0.24 -0.1
942,351 + BPHYT_RS23965 0.58 -0.4
942,388 + BPHYT_RS23965 0.61 -0.3
942,568 - BPHYT_RS23965 0.72 +0.3
942,568 - BPHYT_RS23965 0.72 -0.0
943,370 + BPHYT_RS23970 0.34 +0.1
943,371 - BPHYT_RS23970 0.34 -0.4
943,634 + BPHYT_RS23970 0.59 -0.0
943,634 + BPHYT_RS23970 0.59 +0.2

Or see this region's nucleotide sequence