Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22015

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22005 and BPHYT_RS22010 are separated by 39 nucleotidesBPHYT_RS22010 and BPHYT_RS22015 overlap by 8 nucleotidesBPHYT_RS22015 and BPHYT_RS22020 are separated by 303 nucleotides BPHYT_RS22005: BPHYT_RS22005 - ABC transporter permease, at 492,129 to 492,923 _RS22005 BPHYT_RS22010: BPHYT_RS22010 - ABC transporter permease, at 492,963 to 493,877 _RS22010 BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961 _RS22015 BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143 _RS22020 Position (kb) 493 494 495Strain fitness (log2 ratio) -1 0 1at 493.006 kb on + strandat 493.470 kb on + strand, within BPHYT_RS22010at 493.549 kb on + strand, within BPHYT_RS22010at 493.550 kb on - strand, within BPHYT_RS22010at 493.569 kb on + strand, within BPHYT_RS22010at 493.630 kb on + strand, within BPHYT_RS22010at 493.634 kb on - strand, within BPHYT_RS22010at 494.307 kb on - strand, within BPHYT_RS22015at 494.325 kb on + strand, within BPHYT_RS22015at 494.590 kb on - strand, within BPHYT_RS22015at 495.104 kb on + strandat 495.105 kb on - strandat 495.226 kb on - strandat 495.572 kb on + strand, within BPHYT_RS22020at 495.841 kb on + strand, within BPHYT_RS22020

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
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493,006 + +1.5
493,470 + BPHYT_RS22010 0.55 -0.4
493,549 + BPHYT_RS22010 0.64 +0.0
493,550 - BPHYT_RS22010 0.64 +0.5
493,569 + BPHYT_RS22010 0.66 +0.3
493,630 + BPHYT_RS22010 0.73 +1.1
493,634 - BPHYT_RS22010 0.73 +0.0
494,307 - BPHYT_RS22015 0.40 +0.3
494,325 + BPHYT_RS22015 0.42 +0.2
494,590 - BPHYT_RS22015 0.66 +1.0
495,104 + -0.6
495,105 - +0.0
495,226 - +0.9
495,572 + BPHYT_RS22020 0.35 +0.0
495,841 + BPHYT_RS22020 0.66 +0.2

Or see this region's nucleotide sequence