Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16475

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,735,317	+		BPHYT_RS16470	0.28	+0.0
3,735,317	+		BPHYT_RS16470	0.28	-0.6
3,735,317	+		BPHYT_RS16470	0.28	+0.0
3,735,318	-		BPHYT_RS16470	0.28	-0.2
3,735,320	-		BPHYT_RS16470	0.28	-0.4
3,735,568	+		BPHYT_RS16470	0.60	+1.4
3,735,568	+		BPHYT_RS16470	0.60	+0.2
3,735,569	-		BPHYT_RS16470	0.60	-0.1
3,735,866	+				-0.7
3,735,866	+				+0.4
3,735,866	+				+0.6
3,735,867	-				+0.8
3,736,028	+				-1.2
3,736,028	+				-0.6
3,736,029	-				+0.4
3,736,029	-				+0.1
3,736,029	-				+1.2
3,736,092	+				-0.0
3,736,093	-				-0.1
3,736,105	-				-0.1
3,736,105	-				+0.4
3,736,203	-				+1.4
3,736,261	-		BPHYT_RS16475	0.32	-1.0
3,736,261	-		BPHYT_RS16475	0.32	-0.0
3,736,493	+				-0.1
3,736,552	+				+1.1
3,736,566	-				-0.1
3,736,572	+				-0.9
3,736,573	-				+0.1
3,736,573	-				-1.0
3,736,753	-		BPHYT_RS16480	0.23	-1.0
3,736,758	+		BPHYT_RS16480	0.24	+0.1
3,736,759	-		BPHYT_RS16480	0.24	-0.7
3,736,885	-		BPHYT_RS16480	0.44	+0.5
3,736,885	-		BPHYT_RS16480	0.44	-1.1
3,737,024	-		BPHYT_RS16480	0.67	-0.2
3,737,070	+		BPHYT_RS16480	0.74	+0.8
3,737,071	-		BPHYT_RS16480	0.74	-1.1
3,737,203	+				+0.0
3,737,203	+				+0.4
3,737,203	+				+0.6
3,737,232	+				-0.1
3,737,233	-				+1.4