Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01950 and BPHYT_RS01955 are separated by 26 nucleotides BPHYT_RS01955 and BPHYT_RS01960 overlap by 1 nucleotides BPHYT_RS01960 and BPHYT_RS01965 are separated by 77 nucleotides BPHYT_RS01965 and BPHYT_RS01970 are separated by 149 nucleotides
BPHYT_RS01950: BPHYT_RS01950 - phosphoheptose isomerase, at 442,339 to 442,926
_RS01950
BPHYT_RS01955: BPHYT_RS01955 - hypothetical protein, at 442,953 to 443,750
_RS01955
BPHYT_RS01960: BPHYT_RS01960 - cytochrome C, at 443,750 to 444,097
_RS01960
BPHYT_RS01965: BPHYT_RS01965 - tRNA-Ala, at 444,175 to 444,250
_RS01965
BPHYT_RS01970: BPHYT_RS01970 - methyl-accepting chemotaxis protein, at 444,400 to 446,157
_RS01970
Position (kb) 443
444
445 Strain fitness (log2 ratio) -1
0
1 at 442.799 kb on + strand, within BPHYT_RS01950 at 442.800 kb on - strand, within BPHYT_RS01950 at 442.800 kb on - strand, within BPHYT_RS01950 at 442.852 kb on - strand, within BPHYT_RS01950 at 442.947 kb on + strand at 442.947 kb on + strand at 442.948 kb on - strand at 442.948 kb on - strand at 442.961 kb on - strand at 442.961 kb on - strand at 443.356 kb on - strand, within BPHYT_RS01955 at 443.446 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.542 kb on - strand, within BPHYT_RS01955 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.936 kb on + strand, within BPHYT_RS01960 at 443.937 kb on - strand, within BPHYT_RS01960 at 444.156 kb on + strand at 444.182 kb on + strand at 444.182 kb on + strand at 444.183 kb on - strand, within BPHYT_RS01965 at 444.281 kb on - strand at 444.321 kb on + strand at 445.086 kb on + strand, within BPHYT_RS01970 at 445.086 kb on + strand, within BPHYT_RS01970 at 445.087 kb on - strand, within BPHYT_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 442,799 + BPHYT_RS01950 0.78 +1.1 442,800 - BPHYT_RS01950 0.78 +0.4 442,800 - BPHYT_RS01950 0.78 +1.1 442,852 - BPHYT_RS01950 0.87 +0.3 442,947 + +1.0 442,947 + +0.2 442,948 - -0.3 442,948 - +0.4 442,961 - -0.2 442,961 - +0.6 443,356 - BPHYT_RS01955 0.51 -0.5 443,446 - BPHYT_RS01955 0.62 -1.0 443,542 - BPHYT_RS01955 0.74 -0.6 443,542 - BPHYT_RS01955 0.74 +0.7 443,542 - BPHYT_RS01955 0.74 -0.1 443,936 + BPHYT_RS01960 0.53 -0.3 443,936 + BPHYT_RS01960 0.53 +0.5 443,936 + BPHYT_RS01960 0.53 -0.1 443,937 - BPHYT_RS01960 0.54 -0.0 444,156 + +0.0 444,182 + -0.3 444,182 + +0.2 444,183 - BPHYT_RS01965 0.11 +0.2 444,281 - -0.1 444,321 + +0.7 445,086 + BPHYT_RS01970 0.39 -0.8 445,086 + BPHYT_RS01970 0.39 -0.5 445,087 - BPHYT_RS01970 0.39 -1.7
Or see this region's nucleotide sequence