Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35225

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,505,743	+		BPHYT_RS35215	0.57	-0.6
3,506,113	-				-0.1
3,506,123	-				-0.1
3,506,246	-		BPHYT_RS35220	0.34	+0.0
3,506,434	+		BPHYT_RS35220	0.80	-0.1
3,506,434	+		BPHYT_RS35220	0.80	-0.2
3,506,434	+		BPHYT_RS35220	0.80	-2.4
3,506,435	-		BPHYT_RS35220	0.80	-1.3
3,506,435	-		BPHYT_RS35220	0.80	+0.1
3,506,482	+				-0.3
3,506,483	-				-0.7
3,506,861	-		BPHYT_RS35225	0.27	-0.1
3,507,119	+		BPHYT_RS35225	0.47	-0.5
3,507,141	-		BPHYT_RS35225	0.49	+0.3
3,507,641	+		BPHYT_RS35225	0.88	-0.0
3,507,641	+		BPHYT_RS35225	0.88	+1.2
3,507,661	-		BPHYT_RS35225	0.90	+0.1
3,507,987	+		BPHYT_RS35230	0.23	+1.5
3,508,253	-		BPHYT_RS35230	0.61	+1.0
3,508,253	-				+1.8
3,508,579	+				+0.4
3,508,628	-				+0.4
3,508,698	-				-0.6
3,508,783	-		BPHYT_RS35235	0.13	-0.3