Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33580

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
3,118,743	-				+0.4
3,118,770	-				-1.0
3,118,770	-				-0.2
3,118,770	-				-0.3
3,118,770	-				-0.5
3,118,770	-				-0.1
3,118,770	-				+0.0
3,118,783	-				+0.4
3,118,957	-		BPHYT_RS33580	0.16	-0.8
3,118,957	-		BPHYT_RS33580	0.16	-1.2
3,119,074	-		BPHYT_RS33580	0.29	-1.7
3,119,383	-		BPHYT_RS33580	0.65	+0.5
3,119,394	-				-0.1
3,119,394	-		BPHYT_RS33580	0.66	-1.0
3,119,461	-		BPHYT_RS33580	0.73	-0.6
3,119,461	-		BPHYT_RS33580	0.73	-0.9
3,119,461	-		BPHYT_RS33580	0.73	-0.9
3,119,635	-				-1.1
3,119,696	-				-0.2
3,119,696	-				+0.1
3,119,696	-				+0.8
3,119,696	-				+0.7
3,119,734	-		BPHYT_RS33585	0.14	-0.4
3,120,005	-				+0.0
3,120,017	-				+0.6
3,120,017	-				+0.0
3,120,183	+				+0.2
3,120,210	+				-0.7
3,120,210	+				-0.6
3,120,228	-				+0.0
3,120,351	-				+0.3
3,120,351	-				-0.1
3,120,411	-		BPHYT_RS33590	0.11	-0.3
3,120,608	+		BPHYT_RS33590	0.29	-0.2
3,120,608	+		BPHYT_RS33590	0.29	-0.6
3,120,609	-		BPHYT_RS33590	0.29	+0.7