Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32955

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
2,973,291	+				-0.5
2,973,355	+				+0.6
2,973,383	+				+0.2
2,973,383	+				+0.2
2,973,383	+				-0.1
2,973,384	-				-0.3
2,973,418	+				+0.1
2,973,419	-				-0.2
2,973,419	-				+0.1
2,973,429	+				+0.4
2,973,491	+		BPHYT_RS32955	0.11	+0.3
2,973,703	+		BPHYT_RS32955	0.44	+0.1
2,973,741	-		BPHYT_RS32955	0.49	-0.5
2,973,822	+		BPHYT_RS32955	0.62	-0.5
2,973,914	-		BPHYT_RS32955	0.76	-0.2
2,973,914	-		BPHYT_RS32955	0.76	-0.0
2,974,029	-				+0.6
2,974,053	-				+1.0
2,974,073	+				-0.4
2,974,074	-				+0.3
2,974,320	-		BPHYT_RS32960	0.32	-0.1
2,974,320	-		BPHYT_RS32960	0.32	+0.2
2,974,833	+				-0.1
2,974,834	-				+0.8
2,974,852	-				-0.1
2,974,852	-				+0.1
2,974,861	-				-1.8
2,974,886	-				-0.2