Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27185

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS27180 and BPHYT_RS27185 are separated by 253 nucleotidesBPHYT_RS27185 and BPHYT_RS27190 overlap by 8 nucleotides BPHYT_RS27180: BPHYT_RS27180 - GntR family transcriptional regulator, at 1,675,383 to 1,676,084 _RS27180 BPHYT_RS27185: BPHYT_RS27185 - D-ribose transporter ATP-binding protein, at 1,676,338 to 1,677,888 _RS27185 BPHYT_RS27190: BPHYT_RS27190 - sugar ABC transporter permease, at 1,677,881 to 1,678,912 _RS27190 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -1 0 1at 1675.486 kb on - strand, within BPHYT_RS27180at 1675.874 kb on - strand, within BPHYT_RS27180at 1675.893 kb on + strand, within BPHYT_RS27180at 1675.894 kb on - strand, within BPHYT_RS27180at 1676.142 kb on + strandat 1676.394 kb on - strandat 1676.695 kb on + strand, within BPHYT_RS27185at 1676.748 kb on + strand, within BPHYT_RS27185at 1676.977 kb on + strand, within BPHYT_RS27185at 1676.977 kb on + strand, within BPHYT_RS27185at 1677.388 kb on + strand, within BPHYT_RS27185at 1677.389 kb on - strand, within BPHYT_RS27185at 1678.603 kb on + strand, within BPHYT_RS27190at 1678.694 kb on + strand, within BPHYT_RS27190at 1678.695 kb on - strand, within BPHYT_RS27190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
1,675,486 - BPHYT_RS27180 0.15 -0.8
1,675,874 - BPHYT_RS27180 0.70 -0.4
1,675,893 + BPHYT_RS27180 0.73 -0.3
1,675,894 - BPHYT_RS27180 0.73 +0.4
1,676,142 + +0.0
1,676,394 - -0.1
1,676,695 + BPHYT_RS27185 0.23 -0.3
1,676,748 + BPHYT_RS27185 0.26 +0.4
1,676,977 + BPHYT_RS27185 0.41 -0.0
1,676,977 + BPHYT_RS27185 0.41 +0.4
1,677,388 + BPHYT_RS27185 0.68 -0.3
1,677,389 - BPHYT_RS27185 0.68 +0.7
1,678,603 + BPHYT_RS27190 0.70 +0.2
1,678,694 + BPHYT_RS27190 0.79 +0.7
1,678,695 - BPHYT_RS27190 0.79 +0.9

Or see this region's nucleotide sequence